Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm6158-201ENSMUST00000109467 904 ntBASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm14165-201ENSMUST00000121456 952 ntBASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm13445-201ENSMUST00000121664 307 ntBASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 6820431F20Rik-201ENSMUST00000150051 936 ntBASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm45716-203ENSMUST00000153734 644 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm17221-201ENSMUST00000163909 481 ntBASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm17073-201ENSMUST00000168069 556 ntBASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Olfr1432-201ENSMUST00000180978 930 ntAPPRIS ALT2 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm5865-201ENSMUST00000198713 637 ntBASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm44216-201ENSMUST00000203942 157 ntBASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Olfr225-201ENSMUST00000055276 1260 ntAPPRIS ALT2 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Olfr963-201ENSMUST00000073433 936 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Nampt-201ENSMUST00000020886 4527 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Zfp280b-201ENSMUST00000061617 5097 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Atg14-202ENSMUST00000226299 3729 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 CT030159.3-201ENSMUST00000222936 1481 ntTSL 5 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Eif2s3y-201ENSMUST00000091197 1836 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Hif1an-201ENSMUST00000040455 6194 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Recql-202ENSMUST00000100832 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Zdhhc21-201ENSMUST00000030110 8763 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm5420-201ENSMUST00000071008 2206 ntTSL 2 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 C130021I20Rik-201ENSMUST00000147294 3693 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Cit-201ENSMUST00000051704 9514 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Arhgef2-231ENSMUST00000177498 3966 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Sez6l-201ENSMUST00000075387 6055 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Atp11c-201ENSMUST00000033480 5939 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Myo18a-224ENSMUST00000172303 6339 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm17141-201ENSMUST00000167578 3148 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm13104-201ENSMUST00000119651 1446 ntBASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 1810014B01Rik-202ENSMUST00000218095 1622 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Ttll5-202ENSMUST00000040273 4147 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Nfx1-201ENSMUST00000030133 4349 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Fbxo8-201ENSMUST00000040218 3571 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Ces3b-202ENSMUST00000093221 2403 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 D2hgdh-201ENSMUST00000097633 3232 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm12795-201ENSMUST00000117594 539 ntBASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Mir1896-201ENSMUST00000122641 81 ntBASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Platr17-201ENSMUST00000172817 807 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm16755-201ENSMUST00000180595 933 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Mir7032-201ENSMUST00000185154 79 ntBASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm29521-201ENSMUST00000187061 745 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm38321-201ENSMUST00000195053 235 ntBASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm43097-201ENSMUST00000196867 151 ntBASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm32591-203ENSMUST00000204725 696 ntTSL 3 BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm3793-201ENSMUST00000204973 672 ntBASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm19091-201ENSMUST00000208120 978 ntBASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 AC154436.1-201ENSMUST00000227272 782 ntBASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Olfr525-201ENSMUST00000078103 1050 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm4763-201ENSMUST00000081657 882 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Dcun1d2-204ENSMUST00000110840 2853 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Slco2a1-201ENSMUST00000035148 7122 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Rpap1-201ENSMUST00000048493 4744 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 AC153506.1-201ENSMUST00000218768 2915 ntBASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Tasp1-202ENSMUST00000099304 2127 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Adamts9-201ENSMUST00000113438 8016 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Tnfsf13b-203ENSMUST00000207792 4771 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Srrm4-201ENSMUST00000076124 7472 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Usp2-208ENSMUST00000177054 2370 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Dcaf12-201ENSMUST00000030145 3442 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Olfr1349-206ENSMUST00000213656 4492 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC11.54□□□□□ -0.56
Upf3bQ3ULL6 Slc6a20b-201ENSMUST00000026273 6307 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Gm43375-201ENSMUST00000196705 2480 ntBASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Dip2a-205ENSMUST00000160048 6551 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Vcan-202ENSMUST00000109544 5702 ntTSL 5 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Kcnk5-201ENSMUST00000024011 3392 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 D430013B06Rik-201ENSMUST00000192922 1872 ntBASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Scn10a-204ENSMUST00000214408 5877 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Upf3bQ3ULL6 Msh3-201ENSMUST00000022220 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms