Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm43517-201ENSMUST00000110746 3904 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Rfx1P48377 Gm37583-201ENSMUST00000195460 2487 ntBASIC12.84□□□□□ -0.35
Rfx1P48377 Ccdc33-201ENSMUST00000042205 2632 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 Fbxo40-201ENSMUST00000075869 5137 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 Cpvl-202ENSMUST00000203101 1488 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 Atp6v0a4-201ENSMUST00000040259 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 Stx16-201ENSMUST00000044638 3731 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Rfx1P48377 Ipo7-201ENSMUST00000084731 4763 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 Tomm20-201ENSMUST00000179857 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 Tom1l2-204ENSMUST00000095254 4940 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 C4b-201ENSMUST00000069507 5379 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rfx1P48377 Stat1-211ENSMUST00000189347 2588 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.35
Rfx1P48377 Ahrr-202ENSMUST00000109640 2419 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Rfx1P48377 Clu-201ENSMUST00000022616 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Rfx1P48377 Epn2-203ENSMUST00000108712 4458 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Rfx1P48377 Thbs3-202ENSMUST00000119084 2993 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Rfx1P48377 Pcdh15-233ENSMUST00000191709 5346 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Rfx1P48377 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Tpm3-204ENSMUST00000119570 2233 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC12.83□□□□□ -0.36
Rfx1P48377 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
Rfx1P48377 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC12.83□□□□□ -0.36
Rfx1P48377 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Platr10-202ENSMUST00000191479 818 ntBASIC12.83□□□□□ -0.36
Rfx1P48377 Gm37852-201ENSMUST00000193027 350 ntBASIC12.83□□□□□ -0.36
Rfx1P48377 Gm44315-201ENSMUST00000203041 219 ntBASIC12.83□□□□□ -0.36
Rfx1P48377 Gm18212-201ENSMUST00000211678 889 ntBASIC12.83□□□□□ -0.36
Rfx1P48377 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC12.83□□□□□ -0.36
Rfx1P48377 Gm18363-201ENSMUST00000221671 730 ntBASIC12.83□□□□□ -0.36
Rfx1P48377 Abhd11os-203ENSMUST00000222613 363 ntBASIC12.83□□□□□ -0.36
Rfx1P48377 AC159103.1-201ENSMUST00000228325 429 ntBASIC12.83□□□□□ -0.36
Rfx1P48377 Zc3h7a-201ENSMUST00000037633 3825 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Rfx1P48377 Phf21a-205ENSMUST00000111291 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Rangap1-203ENSMUST00000171115 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Cacna2d4-201ENSMUST00000037434 5803 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
Rfx1P48377 Mst1r-201ENSMUST00000035203 4722 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC12.83□□□□□ -0.36
Rfx1P48377 Nfkbiz-204ENSMUST00000114458 3627 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Pask-201ENSMUST00000027493 5779 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Eef2k-204ENSMUST00000106489 3047 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Vipas39-202ENSMUST00000072744 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Oprm1-230ENSMUST00000154906 2039 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Acsl5-201ENSMUST00000043150 4243 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Slc28a1-202ENSMUST00000119083 2899 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Rfx1P48377 Smarca2-201ENSMUST00000025862 5921 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Rfx1P48377 Col4a6-201ENSMUST00000101205 6648 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rfx1P48377 Ogdh-204ENSMUST00000101554 4106 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Gm7993-201ENSMUST00000200970 1384 ntBASIC12.82□□□□□ -0.36
Rfx1P48377 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC12.82□□□□□ -0.36
Rfx1P48377 Npl-201ENSMUST00000041874 1735 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Mblac2-201ENSMUST00000057598 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Abca3-203ENSMUST00000117337 5202 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Wdr78-201ENSMUST00000036451 3671 ntTSL 5 BASIC12.82□□□□□ -0.36
Rfx1P48377 Adam1b-201ENSMUST00000079368 3338 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Rfx1P48377 Khdrbs2-204ENSMUST00000188257 5278 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Edn1-201ENSMUST00000021796 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Atad5-202ENSMUST00000108239 7266 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Rfx1P48377 Gphn-201ENSMUST00000052472 3570 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Slc7a1-201ENSMUST00000048116 7179 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 4930432K21Rik-201ENSMUST00000093375 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Gpm6b-205ENSMUST00000112227 3294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Fanca-202ENSMUST00000118395 3274 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Rfx1P48377 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Rfx1P48377 Gm14277-201ENSMUST00000121195 360 ntBASIC12.82□□□□□ -0.36
Rfx1P48377 Gm4917-201ENSMUST00000121452 650 ntBASIC12.82□□□□□ -0.36
Rfx1P48377 Gm12224-201ENSMUST00000124047 567 ntTSL 2 BASIC12.82□□□□□ -0.36
Rfx1P48377 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Gm7666-201ENSMUST00000146631 819 ntBASIC12.82□□□□□ -0.36
Rfx1P48377 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC12.82□□□□□ -0.36
Rfx1P48377 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC12.82□□□□□ -0.36
Rfx1P48377 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Pvalb-201ENSMUST00000005860 977 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Rfx1P48377 Scnn1a-201ENSMUST00000081440 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Dgcr2-201ENSMUST00000012152 4045 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Dusp11-201ENSMUST00000032071 6435 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Pnpla3-201ENSMUST00000045289 4640 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Rfx1P48377 N4bp2l1-205ENSMUST00000202031 1864 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 F730016J06Rik-201ENSMUST00000126140 1344 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Gm9415-201ENSMUST00000200462 1321 ntBASIC12.82□□□□□ -0.36
Rfx1P48377 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Kcne4-201ENSMUST00000057262 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Bahcc1-203ENSMUST00000122148 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Gm45867-201ENSMUST00000208201 2317 ntBASIC12.82□□□□□ -0.36
Rfx1P48377 Fam53a-203ENSMUST00000065162 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Rfx1P48377 Gm8369-201ENSMUST00000079855 1374 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Rfx1P48377 Kdelc1-201ENSMUST00000027213 1765 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Calr-201ENSMUST00000003912 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Col6a3-202ENSMUST00000097653 9001 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Rfx1P48377 Vipas39-203ENSMUST00000179379 2418 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Gm13104-201ENSMUST00000119651 1446 ntBASIC12.81□□□□□ -0.36
Rfx1P48377 Gpm6b-201ENSMUST00000060210 2858 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Slc25a27-201ENSMUST00000024705 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx1P48377 Sall4-203ENSMUST00000103074 3741 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 71.7 ms