Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Ankrd45-201ENSMUST00000052245 849 ntAPPRIS P2 TSL 5 BASIC10.28□□□□□ -0.76
Cdx2P43241 Fam186a-201ENSMUST00000062631 759 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx2P43241 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx2P43241 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx2P43241 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx2P43241 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx2P43241 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx2P43241 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx2P43241 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx2P43241 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx2P43241 Gm29101-201ENSMUST00000188329 1471 ntBASIC10.28□□□□□ -0.76
Cdx2P43241 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Cdx2P43241 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx2P43241 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx2P43241 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Cdx2P43241 Pfn4-202ENSMUST00000178879 1396 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx2P43241 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx2P43241 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx2P43241 Slc37a4-201ENSMUST00000165839 2086 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx2P43241 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx2P43241 Lgals9-203ENSMUST00000108269 1586 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx2P43241 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.76
Cdx2P43241 Fam78b-202ENSMUST00000126198 2951 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx2P43241 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx2P43241 Gm42943-201ENSMUST00000199676 3242 ntBASIC10.27□□□□□ -0.77
Cdx2P43241 Cdca8-202ENSMUST00000084296 1626 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC10.27□□□□□ -0.77
Cdx2P43241 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Klra9-202ENSMUST00000112032 1279 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Gm14639-201ENSMUST00000120850 866 ntBASIC10.27□□□□□ -0.77
Cdx2P43241 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC10.27□□□□□ -0.77
Cdx2P43241 Gm15341-201ENSMUST00000137315 592 ntTSL 3 BASIC10.27□□□□□ -0.77
Cdx2P43241 Stamos-201ENSMUST00000152524 801 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Ube4bos3-201ENSMUST00000155845 756 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Bud31-203ENSMUST00000160075 928 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
Cdx2P43241 Gm22662-201ENSMUST00000175290 256 ntBASIC10.27□□□□□ -0.77
Cdx2P43241 1700026J14Rik-201ENSMUST00000180937 794 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 C430039J16Rik-201ENSMUST00000181148 658 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Gsdmcl2-202ENSMUST00000185391 796 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Gm36982-201ENSMUST00000193796 1128 ntBASIC10.27□□□□□ -0.77
Cdx2P43241 Gm31678-201ENSMUST00000198262 454 ntTSL 3 BASIC10.27□□□□□ -0.77
Cdx2P43241 Gm42687-201ENSMUST00000199075 164 ntBASIC10.27□□□□□ -0.77
Cdx2P43241 Polr1d-204ENSMUST00000200993 1167 ntTSL 5 BASIC10.27□□□□□ -0.77
Cdx2P43241 Gm44540-201ENSMUST00000205640 354 ntBASIC10.27□□□□□ -0.77
Cdx2P43241 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Gm35239-201ENSMUST00000218346 487 ntTSL 3 BASIC10.27□□□□□ -0.77
Cdx2P43241 Olfr456-201ENSMUST00000057251 1052 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Cdx2P43241 Klra9-201ENSMUST00000071554 1123 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Gm9701-201ENSMUST00000077976 427 ntBASIC10.27□□□□□ -0.77
Cdx2P43241 Olfr553-201ENSMUST00000098222 981 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Cdx2P43241 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC10.27□□□□□ -0.77
Cdx2P43241 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Gm43482-201ENSMUST00000202797 1861 ntBASIC10.27□□□□□ -0.77
Cdx2P43241 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Cdx2P43241 Elf2-206ENSMUST00000163748 2656 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Gm30228-201ENSMUST00000218501 1949 ntTSL 3 BASIC10.27□□□□□ -0.77
Cdx2P43241 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx2P43241 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC10.26□□□□□ -0.77
Cdx2P43241 Gm43174-201ENSMUST00000195914 2445 ntBASIC10.26□□□□□ -0.77
Cdx2P43241 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Gpr19-201ENSMUST00000046255 1610 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Slc17a8-202ENSMUST00000105295 1863 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Als2cr12-206ENSMUST00000191565 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Gm22751-201ENSMUST00000102077 109 ntBASIC10.26□□□□□ -0.77
Cdx2P43241 Mir692-3-201ENSMUST00000102079 109 ntBASIC10.26□□□□□ -0.77
Cdx2P43241 Mir692-2-201ENSMUST00000102081 109 ntBASIC10.26□□□□□ -0.77
Cdx2P43241 Snora68-201ENSMUST00000104375 131 ntBASIC10.26□□□□□ -0.77
Cdx2P43241 Smim24-201ENSMUST00000105322 901 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Gm13505-201ENSMUST00000121666 817 ntBASIC10.26□□□□□ -0.77
Cdx2P43241 1700095J12Rik-201ENSMUST00000124620 737 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx2P43241 Pradc1-204ENSMUST00000126805 953 ntTSL 2 BASIC10.26□□□□□ -0.77
Cdx2P43241 Gm8464-202ENSMUST00000146697 1142 ntBASIC10.26□□□□□ -0.77
Cdx2P43241 Ttc39b-206ENSMUST00000148811 727 ntTSL 3 BASIC10.26□□□□□ -0.77
Cdx2P43241 Gm4750-201ENSMUST00000151942 1142 ntBASIC10.26□□□□□ -0.77
Cdx2P43241 Gm12847-201ENSMUST00000156219 413 ntTSL 5 BASIC10.26□□□□□ -0.77
Cdx2P43241 Gm16227-201ENSMUST00000160088 563 ntTSL 3 BASIC10.26□□□□□ -0.77
Cdx2P43241 Rhox12-203ENSMUST00000183737 761 ntTSL 3 BASIC10.26□□□□□ -0.77
Cdx2P43241 Gm28342-201ENSMUST00000190308 589 ntTSL 3 BASIC10.26□□□□□ -0.77
Cdx2P43241 4930509H03Rik-201ENSMUST00000196088 1215 ntBASIC10.26□□□□□ -0.77
Cdx2P43241 BB187690-201ENSMUST00000198619 1176 ntBASIC10.26□□□□□ -0.77
Cdx2P43241 4930478P22Rik-202ENSMUST00000201921 723 ntTSL 3 BASIC10.26□□□□□ -0.77
Cdx2P43241 Rarres2-203ENSMUST00000204182 672 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
Cdx2P43241 Eif3k-204ENSMUST00000208616 909 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms