Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC12.54□□□□□ -0.4
Traf1P39428 4930571N24Rik-202ENSMUST00000142914 598 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC12.54□□□□□ -0.4
Traf1P39428 Gm20392-201ENSMUST00000173047 701 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Scgb2b7-201ENSMUST00000178258 520 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Gm29283-201ENSMUST00000187394 288 ntTSL 5 BASIC12.54□□□□□ -0.4
Traf1P39428 Gm9916-201ENSMUST00000192943 1228 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Gm5870-201ENSMUST00000196461 282 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Gm43778-201ENSMUST00000199438 199 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Ormdl2-203ENSMUST00000219215 1051 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 CT025689.1-201ENSMUST00000225214 283 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Gm26782-203ENSMUST00000227103 751 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Scgb2b2-201ENSMUST00000038835 520 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Acot13-201ENSMUST00000006900 721 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Fam222b-203ENSMUST00000155571 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Slc40a1-201ENSMUST00000027137 3370 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Plekhg4-206ENSMUST00000214056 3654 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Traf1P39428 Gfra2-203ENSMUST00000227697 1323 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Traf1P39428 C530044C16Rik-201ENSMUST00000204275 1624 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Ugt1a10-201ENSMUST00000113142 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Trim25-201ENSMUST00000000284 5566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Gm42427-201ENSMUST00000200473 5292 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Mroh8-202ENSMUST00000143663 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Txndc9-208ENSMUST00000195247 1699 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 AC156631.1-201ENSMUST00000215213 1358 ntTSL 5 BASIC12.54□□□□□ -0.4
Traf1P39428 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Traf1P39428 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Vipr2-201ENSMUST00000011315 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Mtmr11-201ENSMUST00000054356 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Scnn1b-201ENSMUST00000033161 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Gm10829-201ENSMUST00000202084 2988 ntBASIC12.53□□□□□ -0.4
Traf1P39428 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC12.53□□□□□ -0.4
Traf1P39428 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
Traf1P39428 Gm3409-202ENSMUST00000110599 1154 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Traf1P39428 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC12.53□□□□□ -0.4
Traf1P39428 Gm12453-201ENSMUST00000121981 331 ntBASIC12.53□□□□□ -0.4
Traf1P39428 Gm25288-201ENSMUST00000122800 265 ntBASIC12.53□□□□□ -0.4
Traf1P39428 Smim20-201ENSMUST00000147148 922 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Gm13412-201ENSMUST00000150621 677 ntTSL 3 BASIC12.53□□□□□ -0.4
Traf1P39428 Ccnb1-ps-201ENSMUST00000155338 1287 ntBASIC12.53□□□□□ -0.4
Traf1P39428 Ccnb1-207ENSMUST00000174038 1182 ntTSL 5 BASIC12.53□□□□□ -0.4
Traf1P39428 Gm24328-201ENSMUST00000175104 67 ntBASIC12.53□□□□□ -0.4
Traf1P39428 Gm3415-202ENSMUST00000179214 1154 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Traf1P39428 Gm9162-201ENSMUST00000182081 991 ntBASIC12.53□□□□□ -0.4
Traf1P39428 Gm7255-201ENSMUST00000187371 908 ntBASIC12.53□□□□□ -0.4
Traf1P39428 Gm42423-201ENSMUST00000196396 670 ntTSL 3 BASIC12.53□□□□□ -0.4
Traf1P39428 Gm3409-203ENSMUST00000199142 1167 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Traf1P39428 Fgfbp1-203ENSMUST00000199894 1228 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
Traf1P39428 Gm3402-203ENSMUST00000200228 1154 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Traf1P39428 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC12.53□□□□□ -0.4
Traf1P39428 Gm45542-201ENSMUST00000210456 438 ntTSL 2 BASIC12.53□□□□□ -0.4
Traf1P39428 AC164556.1-201ENSMUST00000221318 751 ntBASIC12.53□□□□□ -0.4
Traf1P39428 Gsto1-201ENSMUST00000026050 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Try5-201ENSMUST00000064324 801 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Vcp-rs-201ENSMUST00000120233 2406 ntBASIC12.53□□□□□ -0.4
Traf1P39428 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC12.53□□□□□ -0.4
Traf1P39428 Snx27-208ENSMUST00000200642 1308 ntTSL 5 BASIC12.53□□□□□ -0.4
Traf1P39428 Fam83a-202ENSMUST00000160942 2876 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Traf1P39428 Dhx38-201ENSMUST00000042601 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 AC153524.2-202ENSMUST00000220401 1794 ntBASIC12.53□□□□□ -0.4
Traf1P39428 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC12.53□□□□□ -0.4
Traf1P39428 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Traf1P39428 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Traf1P39428 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Traf1P39428 Trp63-207ENSMUST00000115308 2380 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Traf1P39428 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Traf1P39428 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Traf1P39428 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Traf1P39428 D930020B18Rik-201ENSMUST00000120642 3335 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Traf1P39428 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Traf1P39428 Ptpru-202ENSMUST00000097860 3365 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Traf1P39428 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.4
Traf1P39428 Med19-201ENSMUST00000102645 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Traf1P39428 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Traf1P39428 Gm21986-201ENSMUST00000113671 5560 ntTSL 2 BASIC12.52□□□□□ -0.4
Traf1P39428 Cit-201ENSMUST00000051704 9514 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Mid1-214ENSMUST00000163810 3689 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Traf1P39428 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 55 ms