Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Spns3-201ENSMUST00000021154 1804 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Usp4P35123 Qrfpr-201ENSMUST00000091227 1839 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Usp4P35123 Myh1-203ENSMUST00000124516 6081 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Usp4P35123 Dhx34-204ENSMUST00000121123 3880 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Usp4P35123 Zfyve1-201ENSMUST00000048319 4036 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Usp4P35123 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Usp4P35123 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Gm29125-201ENSMUST00000187121 3220 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Gpr19-201ENSMUST00000046255 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Msrb3-201ENSMUST00000092143 3843 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 2410004P03Rik-201ENSMUST00000095823 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Gm5822-201ENSMUST00000161562 1378 ntBASIC11.31□□□□□ -0.6
Usp4P35123 Hnrnpk-216ENSMUST00000177019 2626 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 1700047M11Rik-202ENSMUST00000189594 2607 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Slitrk3-202ENSMUST00000192477 4592 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Meox2-201ENSMUST00000041183 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Gpm6b-207ENSMUST00000112229 3203 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 4931423N10Rik-201ENSMUST00000028113 1842 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Arfgef3-201ENSMUST00000019999 5606 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Hmbox1-201ENSMUST00000022544 3396 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Rbbp5-201ENSMUST00000027700 3385 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Magt1-204ENSMUST00000151689 4531 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC11.31□□□□□ -0.6
Usp4P35123 Mir1901-201ENSMUST00000122616 78 ntBASIC11.31□□□□□ -0.6
Usp4P35123 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC11.31□□□□□ -0.6
Usp4P35123 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC11.31□□□□□ -0.6
Usp4P35123 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC11.31□□□□□ -0.6
Usp4P35123 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC11.31□□□□□ -0.6
Usp4P35123 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC11.31□□□□□ -0.6
Usp4P35123 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Rn7s6-201ENSMUST00000175005 291 ntBASIC11.31□□□□□ -0.6
Usp4P35123 Gm7593-201ENSMUST00000187246 644 ntBASIC11.31□□□□□ -0.6
Usp4P35123 Gm3551-201ENSMUST00000190750 664 ntBASIC11.31□□□□□ -0.6
Usp4P35123 C630004L07Rik-201ENSMUST00000193236 1275 ntBASIC11.31□□□□□ -0.6
Usp4P35123 Gm44506-201ENSMUST00000206278 965 ntBASIC11.31□□□□□ -0.6
Usp4P35123 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC11.31□□□□□ -0.6
Usp4P35123 Gm34973-201ENSMUST00000217087 572 ntTSL 3 BASIC11.31□□□□□ -0.6
Usp4P35123 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC11.31□□□□□ -0.6
Usp4P35123 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC11.31□□□□□ -0.6
Usp4P35123 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Scgb2b2-201ENSMUST00000038835 520 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Gm9873-201ENSMUST00000063891 1097 ntBASIC11.31□□□□□ -0.6
Usp4P35123 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Usp4P35123 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 9530059O14Rik-201ENSMUST00000181107 3978 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Tex11-202ENSMUST00000113716 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Lrrn4cl-201ENSMUST00000096257 2583 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Lama4-201ENSMUST00000019992 6046 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Prc1-202ENSMUST00000163812 3026 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 5730403I07Rik-201ENSMUST00000183878 2033 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Ehd2-201ENSMUST00000098799 5119 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC11.31□□□□□ -0.6
Usp4P35123 Mindy4-201ENSMUST00000053094 4270 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usp4P35123 Babam2-204ENSMUST00000114515 1497 ntTSL 5 BASIC11.31□□□□□ -0.6
Usp4P35123 Gm42815-201ENSMUST00000198787 1470 ntBASIC11.31□□□□□ -0.6
Usp4P35123 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Usp4P35123 Ybey-201ENSMUST00000049185 4522 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Pold1-201ENSMUST00000049343 3454 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Usp4P35123 Cct8l1-201ENSMUST00000045016 1961 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Usp4P35123 Sfxn5-201ENSMUST00000045846 3656 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Ptpn11-201ENSMUST00000054547 5535 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Tubb5-201ENSMUST00000001566 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Phtf1os-201ENSMUST00000160110 4046 ntBASIC11.3□□□□□ -0.6
Usp4P35123 Cdh18-207ENSMUST00000226693 2165 ntBASIC11.3□□□□□ -0.6
Usp4P35123 Igsf6-201ENSMUST00000047194 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 4930432K21Rik-201ENSMUST00000093375 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Ubap2-202ENSMUST00000108068 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Sptan1-204ENSMUST00000113717 7958 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Arhgap17-202ENSMUST00000106442 3336 ntAPPRIS P4 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 C330027C09Rik-201ENSMUST00000048374 3974 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC11.3□□□□□ -0.6
Usp4P35123 Selenot-ps-201ENSMUST00000119098 593 ntBASIC11.3□□□□□ -0.6
Usp4P35123 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC11.3□□□□□ -0.6
Usp4P35123 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC11.3□□□□□ -0.6
Usp4P35123 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Polr1d-204ENSMUST00000200993 1167 ntTSL 5 BASIC11.3□□□□□ -0.6
Usp4P35123 4930478P22Rik-202ENSMUST00000201921 723 ntTSL 3 BASIC11.3□□□□□ -0.6
Usp4P35123 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC11.3□□□□□ -0.6
Usp4P35123 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC11.3□□□□□ -0.6
Usp4P35123 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC11.3□□□□□ -0.6
Usp4P35123 Gm3028-201ENSMUST00000213805 1119 ntBASIC11.3□□□□□ -0.6
Usp4P35123 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC11.3□□□□□ -0.6
Usp4P35123 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Htr1d-203ENSMUST00000121571 2426 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Atp5g1-201ENSMUST00000090541 4715 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Fanca-202ENSMUST00000118395 3274 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usp4P35123 Acadsb-202ENSMUST00000117518 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 69.3 ms