Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 C530044C16Rik-201ENSMUST00000204275 1624 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Clp1Q99LI9 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Clp1Q99LI9 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Clp1Q99LI9 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Clp1Q99LI9 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Clp1Q99LI9 Prg4-201ENSMUST00000006171 1869 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Clp1Q99LI9 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Cblb-203ENSMUST00000226593 3864 ntAPPRIS ALT2 BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Idua-203ENSMUST00000119212 3022 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Rpl17-ps1-201ENSMUST00000119156 552 ntBASIC11.48□□□□□ -0.57
Clp1Q99LI9 Gm16420-201ENSMUST00000120258 856 ntBASIC11.48□□□□□ -0.57
Clp1Q99LI9 Gm6425-201ENSMUST00000136332 790 ntBASIC11.48□□□□□ -0.57
Clp1Q99LI9 Gm16227-201ENSMUST00000160088 563 ntTSL 3 BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Rab11a-204ENSMUST00000167569 726 ntTSL 3 BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Gm17733-201ENSMUST00000181883 1048 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Gm28893-201ENSMUST00000190951 1108 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 4930509H03Rik-201ENSMUST00000196088 1215 ntBASIC11.48□□□□□ -0.57
Clp1Q99LI9 Gm44917-201ENSMUST00000208798 520 ntBASIC11.48□□□□□ -0.57
Clp1Q99LI9 AC140381.2-201ENSMUST00000217935 1260 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 AC153379.1-201ENSMUST00000218174 485 ntTSL 3 BASIC11.48□□□□□ -0.57
Clp1Q99LI9 AC163638.2-201ENSMUST00000224920 827 ntBASIC11.48□□□□□ -0.57
Clp1Q99LI9 AC161172.1-201ENSMUST00000227801 486 ntBASIC11.48□□□□□ -0.57
Clp1Q99LI9 AC141884.2-201ENSMUST00000228811 775 ntBASIC11.48□□□□□ -0.57
Clp1Q99LI9 Ifne-201ENSMUST00000056014 664 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Olfr456-201ENSMUST00000057251 1052 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Prl8a1-201ENSMUST00000006664 864 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Gm18719-201ENSMUST00000196696 1413 ntBASIC11.48□□□□□ -0.57
Clp1Q99LI9 Gm1661-201ENSMUST00000077500 1422 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Als2cr12-206ENSMUST00000191565 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Clec12b-201ENSMUST00000032261 1521 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Gad1-ps-201ENSMUST00000167243 1776 ntBASIC11.48□□□□□ -0.57
Clp1Q99LI9 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC11.48□□□□□ -0.57
Clp1Q99LI9 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm43727-201ENSMUST00000198021 2647 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm10537-201ENSMUST00000192625 1698 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Mir291b-201ENSMUST00000104838 79 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Pxmp4-202ENSMUST00000109703 560 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 1700064H15Rik-201ENSMUST00000119133 394 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm8988-201ENSMUST00000155015 1240 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Tnnc1-202ENSMUST00000169169 721 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm25591-201ENSMUST00000177317 94 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Vmn2r-ps9-201ENSMUST00000177446 1099 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm26871-204ENSMUST00000181310 523 ntTSL 3 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm5801-201ENSMUST00000182247 780 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm17799-201ENSMUST00000183270 667 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm8707-201ENSMUST00000183325 980 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Psmb6-ps2-201ENSMUST00000187074 705 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm38007-201ENSMUST00000192187 313 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Pcdh7-207ENSMUST00000199310 659 ntTSL 2 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Olfr202-202ENSMUST00000201687 1232 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Eif3k-204ENSMUST00000208616 909 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm19990-201ENSMUST00000219468 1224 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm46349-201ENSMUST00000219678 917 ntTSL 5 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 AC124356.1-201ENSMUST00000221469 698 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Cxcl10-201ENSMUST00000038816 1094 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm9531-201ENSMUST00000055820 638 ntTSL 3 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Tdpoz4-201ENSMUST00000075953 1113 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm8420-201ENSMUST00000097103 598 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Olfr553-201ENSMUST00000098222 981 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 AC122840.1-201ENSMUST00000220915 3334 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gm38187-201ENSMUST00000195609 4709 ntBASIC11.47□□□□□ -0.57
Clp1Q99LI9 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Clp1Q99LI9 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms