Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 AC164614.1-201ENSMUST00000216038 397 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 Gm2696-201ENSMUST00000220062 723 ntAPPRIS P5 BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm34983-202ENSMUST00000220432 494 ntTSL 3 BASIC12.53□□□□□ -0.4
Col1a1P11087 CT030011.1-201ENSMUST00000221959 264 ntTSL 5 BASIC12.53□□□□□ -0.4
Col1a1P11087 AC161052.1-201ENSMUST00000222856 910 ntTSL 5 BASIC12.53□□□□□ -0.4
Col1a1P11087 AC114585.2-201ENSMUST00000227693 486 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 AC161877.1-201ENSMUST00000227736 699 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 AC123533.3-201ENSMUST00000228056 454 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 Rpl22l1-201ENSMUST00000043867 552 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm26205-201ENSMUST00000082907 134 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Ucp1-201ENSMUST00000034146 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Vbp1-201ENSMUST00000033540 1595 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Arxes1-201ENSMUST00000057625 1580 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Col1a1P11087 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Filip1l-202ENSMUST00000159414 3253 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
Col1a1P11087 Sppl2c-201ENSMUST00000059448 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm43625-201ENSMUST00000199177 1539 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
Col1a1P11087 A830018L16Rik-209ENSMUST00000179089 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Olfr543-202ENSMUST00000219647 1456 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Col1a1P11087 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC12.53□□□□□ -0.4
Col1a1P11087 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm7790-201ENSMUST00000118716 1310 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 Mtcp1-202ENSMUST00000114081 980 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Col1a1P11087 Dppa3-ps-201ENSMUST00000116499 451 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 Olfr1060-ps1-201ENSMUST00000118335 943 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 AA623943-201ENSMUST00000121794 354 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 Gm12744-201ENSMUST00000146976 519 ntTSL 3 BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm15587-202ENSMUST00000156403 709 ntTSL 5 BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm22763-201ENSMUST00000158374 107 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 Gm25694-201ENSMUST00000175448 282 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 1700048F04Rik-201ENSMUST00000199057 1064 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Ift22-204ENSMUST00000200153 670 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm45846-201ENSMUST00000211170 446 ntTSL 2 BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm18596-201ENSMUST00000218133 843 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm8768-201ENSMUST00000220020 826 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 CT009550.1-201ENSMUST00000225750 864 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 Cxcl3-201ENSMUST00000031326 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Xlr4b-201ENSMUST00000069077 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Stau2-202ENSMUST00000054668 2907 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Col1a1P11087 Gm17230-201ENSMUST00000171194 3942 ntBASIC12.52□□□□□ -0.4
Col1a1P11087 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col1a1P11087 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Col1a1P11087 Gm26586-201ENSMUST00000181918 1745 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Col1a1P11087 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col1a1P11087 Ccdc136-201ENSMUST00000096084 3826 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Col1a1P11087 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col1a1P11087 Spert-201ENSMUST00000035243 1430 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col1a1P11087 CN725425-201ENSMUST00000109284 1929 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Col1a1P11087 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Col1a1P11087 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Zwilch-209ENSMUST00000176299 1831 ntTSL 5 BASIC12.52□□□□□ -0.41
Col1a1P11087 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Gm21939-201ENSMUST00000221137 2773 ntBASIC12.52□□□□□ -0.41
Col1a1P11087 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC12.52□□□□□ -0.41
Col1a1P11087 Gm38376-201ENSMUST00000195493 2253 ntBASIC12.52□□□□□ -0.41
Col1a1P11087 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Dcstamp-201ENSMUST00000022913 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Gm25561-201ENSMUST00000104607 125 ntBASIC12.52□□□□□ -0.41
Col1a1P11087 S100a16-205ENSMUST00000107334 879 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
Col1a1P11087 Gm9095-201ENSMUST00000117607 881 ntBASIC12.52□□□□□ -0.41
Col1a1P11087 Gm12011-201ENSMUST00000119734 618 ntBASIC12.52□□□□□ -0.41
Col1a1P11087 Gm9097-201ENSMUST00000120514 880 ntBASIC12.52□□□□□ -0.41
Col1a1P11087 Gm12668-201ENSMUST00000134966 575 ntTSL 3 BASIC12.52□□□□□ -0.41
Col1a1P11087 Gm16013-201ENSMUST00000152249 353 ntTSL 3 BASIC12.52□□□□□ -0.41
Col1a1P11087 Fam240a-201ENSMUST00000177678 499 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Col1a1P11087 2810049E08Rik-201ENSMUST00000185600 1102 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Gm35584-201ENSMUST00000191767 641 ntTSL 5 BASIC12.52□□□□□ -0.41
Col1a1P11087 Gm19058-201ENSMUST00000192135 598 ntBASIC12.52□□□□□ -0.41
Col1a1P11087 Gm37872-201ENSMUST00000192362 886 ntTSL 5 BASIC12.52□□□□□ -0.41
Col1a1P11087 Gm31374-201ENSMUST00000213885 619 ntTSL 5 BASIC12.52□□□□□ -0.41
Col1a1P11087 Gal-201ENSMUST00000025842 712 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col1a1P11087 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col1a1P11087 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC12.51□□□□□ -0.41
Col1a1P11087 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 79.4 ms