Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Nln-205ENSMUST00000224945 2486 ntBASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Unkl-202ENSMUST00000039734 4779 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Nos1-206ENSMUST00000142742 10123 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 4732490B19Rik-201ENSMUST00000130373 2446 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 1600014C10Rik-202ENSMUST00000165308 3335 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 1600014C10Rik-204ENSMUST00000178207 3341 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Dhx34-202ENSMUST00000118795 4076 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Chst15-202ENSMUST00000080215 4813 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Klhl7-201ENSMUST00000030841 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Ing3-202ENSMUST00000115389 2546 ntTSL 5 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Phf24-203ENSMUST00000107976 6538 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Cyp2b10-202ENSMUST00000072438 1916 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Agpat3-204ENSMUST00000105389 3678 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Sez6l-202ENSMUST00000079491 5857 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Trpc6-202ENSMUST00000214596 2913 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Cln3-204ENSMUST00000116269 2487 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Lao1-201ENSMUST00000058651 2349 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Mypn-201ENSMUST00000095580 5246 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Rps6ka6-204ENSMUST00000113428 4135 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm12783-201ENSMUST00000121425 397 ntBASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Calm5-202ENSMUST00000184271 423 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Fabp6-201ENSMUST00000020672 479 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm5996-201ENSMUST00000211110 718 ntBASIC12.15□□□□□ -0.46
Smc1aQ9CU62 AC134869.4-202ENSMUST00000224350 837 ntBASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm5468-202ENSMUST00000227851 682 ntBASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Mthfd1l-203ENSMUST00000120585 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm45234-201ENSMUST00000129411 4359 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Cacna1c-226ENSMUST00000219833 7591 ntTSL 5 BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Ift88-201ENSMUST00000122063 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Gm43127-201ENSMUST00000195890 2789 ntBASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Hmgcll1-201ENSMUST00000008052 3737 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Abca3-203ENSMUST00000117337 5202 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 AC158636.1-201ENSMUST00000220118 1393 ntBASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Pigo-202ENSMUST00000098109 4239 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Smc1aQ9CU62 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
Smc1aQ9CU62 Ern1-201ENSMUST00000001059 6946 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Smc1aQ9CU62 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Smc1aQ9CU62 Armc8-202ENSMUST00000185524 2820 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Smc1aQ9CU62 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Smc1aQ9CU62 Marveld2-201ENSMUST00000022137 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Zer1-201ENSMUST00000044751 4100 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Stat5a-202ENSMUST00000107356 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Nek4-207ENSMUST00000228328 4245 ntAPPRIS P2 BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Hcrtr2-203ENSMUST00000184757 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Oprm1-204ENSMUST00000063036 1427 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Mcf2l-222ENSMUST00000173099 6081 ntTSL 5 BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 4931406C07Rik-201ENSMUST00000034414 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Mapkbp1-201ENSMUST00000066058 6942 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm24791-201ENSMUST00000104284 131 ntBASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm13422-201ENSMUST00000118834 504 ntBASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm20392-201ENSMUST00000173047 701 ntBASIC12.14□□□□□ -0.47
Smc1aQ9CU62 AC238811.4-201ENSMUST00000178019 1246 ntBASIC12.14□□□□□ -0.47
Smc1aQ9CU62 AC238940.3-201ENSMUST00000178830 1246 ntBASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm9884-201ENSMUST00000194343 1222 ntBASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm43380-201ENSMUST00000200421 220 ntBASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm18460-201ENSMUST00000208088 464 ntBASIC12.14□□□□□ -0.47
Smc1aQ9CU62 AC168279.1-201ENSMUST00000214611 382 ntBASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm6722-201ENSMUST00000221586 390 ntBASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm16380-201ENSMUST00000077997 478 ntBASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Zfp964-203ENSMUST00000204285 4333 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gm18210-201ENSMUST00000209001 1524 ntBASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 63.5 ms