Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm14480-201ENSMUST00000118521 433 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm13422-201ENSMUST00000118834 504 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm12899-201ENSMUST00000120565 551 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm4879-201ENSMUST00000122190 1272 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC8.8□□□□□ -1
Hoxd3P09027 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC8.8□□□□□ -1
Hoxd3P09027 Lce6a-201ENSMUST00000138403 795 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
Hoxd3P09027 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC8.8□□□□□ -1
Hoxd3P09027 Mir1956-201ENSMUST00000157748 65 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC8.8□□□□□ -1
Hoxd3P09027 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC8.8□□□□□ -1
Hoxd3P09027 Gm25072-201ENSMUST00000175233 235 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm23694-201ENSMUST00000179335 110 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Gm26915-201ENSMUST00000183080 748 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC8.8□□□□□ -1
Hoxd3P09027 Scgb1b25-ps-201ENSMUST00000186419 415 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm28324-201ENSMUST00000187913 264 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm28189-201ENSMUST00000190085 571 ntTSL 3 BASIC8.8□□□□□ -1
Hoxd3P09027 Gm37154-201ENSMUST00000192266 1290 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm37134-201ENSMUST00000195810 628 ntTSL 3 BASIC8.8□□□□□ -1
Hoxd3P09027 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm43057-201ENSMUST00000196789 429 ntTSL 5 BASIC8.8□□□□□ -1
Hoxd3P09027 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC8.8□□□□□ -1
Hoxd3P09027 Tas2r142-ps5-201ENSMUST00000204651 929 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm44366-201ENSMUST00000204933 674 ntTSL 3 BASIC8.8□□□□□ -1
Hoxd3P09027 Gm44716-201ENSMUST00000209007 710 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm6657-204ENSMUST00000211288 1091 ntAPPRIS P5 TSL 5 BASIC8.8□□□□□ -1
Hoxd3P09027 Gm45856-201ENSMUST00000212752 416 ntBASIC8.8□□□□□ -1
Hoxd3P09027 AC159476.2-201ENSMUST00000216221 418 ntBASIC8.8□□□□□ -1
Hoxd3P09027 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC8.8□□□□□ -1
Hoxd3P09027 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC8.8□□□□□ -1
Hoxd3P09027 Gm19009-201ENSMUST00000223072 823 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gm36862-204ENSMUST00000223365 642 ntTSL 3 BASIC8.8□□□□□ -1
Hoxd3P09027 AC132901.1-201ENSMUST00000224345 508 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Vmn1r232-201ENSMUST00000077001 1159 ntAPPRIS P1 BASIC8.8□□□□□ -1
Hoxd3P09027 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Tmigd1-201ENSMUST00000072633 1366 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Gm37849-201ENSMUST00000194722 1881 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Myh13-201ENSMUST00000081911 5817 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
Hoxd3P09027 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC8.8□□□□□ -1
Hoxd3P09027 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 G6pdx-201ENSMUST00000004327 2652 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
Hoxd3P09027 Gm37422-201ENSMUST00000193794 4718 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC8.8□□□□□ -1
Hoxd3P09027 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC8.8□□□□□ -1
Hoxd3P09027 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Tpm1-213ENSMUST00000113697 1742 ntTSL 2 BASIC8.8□□□□□ -1
Hoxd3P09027 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Gm4900-201ENSMUST00000222046 1628 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
Hoxd3P09027 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC8.79□□□□□ -1
Hoxd3P09027 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Madd-206ENSMUST00000099725 5905 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
Hoxd3P09027 Prpf18-204ENSMUST00000152362 1579 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC8.79□□□□□ -1
Hoxd3P09027 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
Hoxd3P09027 Odam-202ENSMUST00000129757 1370 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
Hoxd3P09027 Mov10l1-203ENSMUST00000146993 4133 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
Hoxd3P09027 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC8.79□□□□□ -1
Hoxd3P09027 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC8.79□□□□□ -1
Hoxd3P09027 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
Hoxd3P09027 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
Hoxd3P09027 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC8.79□□□□□ -1
Hoxd3P09027 Gm14550-201ENSMUST00000117918 407 ntBASIC8.79□□□□□ -1
Hoxd3P09027 Fabp12-203ENSMUST00000119761 548 ntAPPRIS P1 TSL 3 BASIC8.79□□□□□ -1
Hoxd3P09027 Gm14395-201ENSMUST00000120494 563 ntBASIC8.79□□□□□ -1
Hoxd3P09027 Mir1901-201ENSMUST00000122616 78 ntBASIC8.79□□□□□ -1
Hoxd3P09027 Gm22442-201ENSMUST00000157256 144 ntBASIC8.79□□□□□ -1
Hoxd3P09027 Gm8194-201ENSMUST00000159783 859 ntBASIC8.79□□□□□ -1
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms