Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Gm3836-201ENSMUST00000211377 1613 ntBASIC8.81□□□□□ -1
Hoxd3P09027 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC8.81□□□□□ -1
Hoxd3P09027 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC8.81□□□□□ -1
Hoxd3P09027 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC8.81□□□□□ -1
Hoxd3P09027 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC8.81□□□□□ -1
Hoxd3P09027 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Gm25507-201ENSMUST00000116981 144 ntBASIC8.81□□□□□ -1
Hoxd3P09027 Gm11411-201ENSMUST00000117951 719 ntBASIC8.81□□□□□ -1
Hoxd3P09027 Gm16219-201ENSMUST00000120096 274 ntBASIC8.81□□□□□ -1
Hoxd3P09027 Gm11255-201ENSMUST00000120448 1180 ntBASIC8.81□□□□□ -1
Hoxd3P09027 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Platr3-201ENSMUST00000146980 412 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Cfhr3-201ENSMUST00000170441 1022 ntBASIC8.81□□□□□ -1
Hoxd3P09027 Gm3307-201ENSMUST00000176164 632 ntBASIC8.81□□□□□ -1
Hoxd3P09027 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Mir6998-201ENSMUST00000183343 64 ntBASIC8.81□□□□□ -1
Hoxd3P09027 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC8.81□□□□□ -1
Hoxd3P09027 Spcs2-206ENSMUST00000208465 736 ntTSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 E230034D01Rik-203ENSMUST00000217357 1159 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Cyp3a61-ps1-201ENSMUST00000218470 592 ntBASIC8.81□□□□□ -1
Hoxd3P09027 Gm3333-202ENSMUST00000221763 1044 ntBASIC8.81□□□□□ -1
Hoxd3P09027 CT009733.1-203ENSMUST00000224033 451 ntBASIC8.81□□□□□ -1
Hoxd3P09027 AC154594.1-201ENSMUST00000225171 1273 ntBASIC8.81□□□□□ -1
Hoxd3P09027 CT025553.1-201ENSMUST00000226292 299 ntBASIC8.81□□□□□ -1
Hoxd3P09027 AC154843.1-201ENSMUST00000226897 1138 ntBASIC8.81□□□□□ -1
Hoxd3P09027 Gm5564-201ENSMUST00000034916 967 ntBASIC8.81□□□□□ -1
Hoxd3P09027 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC8.81□□□□□ -1
Hoxd3P09027 Olfr1465-201ENSMUST00000080142 924 ntAPPRIS P1 BASIC8.81□□□□□ -1
Hoxd3P09027 mt-Nd1-201ENSMUST00000082392 957 ntAPPRIS P1 BASIC8.81□□□□□ -1
Hoxd3P09027 Gm23680-201ENSMUST00000083162 164 ntBASIC8.81□□□□□ -1
Hoxd3P09027 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Cacna1e-207ENSMUST00000211821 6765 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC8.81□□□□□ -1
Hoxd3P09027 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC8.81□□□□□ -1
Hoxd3P09027 Gm43172-201ENSMUST00000202139 2137 ntBASIC8.81□□□□□ -1
Hoxd3P09027 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC8.81□□□□□ -1
Hoxd3P09027 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Olfr1275-203ENSMUST00000217539 1661 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Cep250-202ENSMUST00000094421 7919 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
Hoxd3P09027 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC8.81□□□□□ -1
Hoxd3P09027 Lilrb4a-201ENSMUST00000217706 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Il1f9-201ENSMUST00000057567 1648 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC8.8□□□□□ -1
Hoxd3P09027 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Apobec1-201ENSMUST00000112585 2127 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 4631405K08Rik-201ENSMUST00000180420 2112 ntTSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Plekha6-204ENSMUST00000187285 5040 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
Hoxd3P09027 Myt1l-201ENSMUST00000021009 5027 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Il33-202ENSMUST00000120388 2537 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Hoxd3P09027 Gm22543-201ENSMUST00000104347 94 ntBASIC8.8□□□□□ -1
Hoxd3P09027 Gin1-202ENSMUST00000112842 1037 ntTSL 1 (best) BASIC8.8□□□□□ -1
Retrieved 100 of 76,532 protein–RNA pairs in 60.8 ms