Protein–RNA interactions for Protein: B2RUQ2

Usf3, Gene model 608, (NCBI), mousemouse

Predictions only

Length 2,221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf3B2RUQ2 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Usf3B2RUQ2 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Usf3B2RUQ2 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Usf3B2RUQ2 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Usf3B2RUQ2 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC9.12□□□□□ -0.95
Usf3B2RUQ2 Avil-201ENSMUST00000026500 3033 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Usf3B2RUQ2 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Usf3B2RUQ2 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Mdm1-201ENSMUST00000020437 3074 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Ankrd7-202ENSMUST00000115396 1157 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm15329-201ENSMUST00000121408 155 ntBASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm17709-201ENSMUST00000174536 1096 ntBASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm8197-202ENSMUST00000193422 934 ntBASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm37284-201ENSMUST00000193607 539 ntBASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Prpf40b-202ENSMUST00000118287 3129 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Sptan1-204ENSMUST00000113717 7958 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 D2hgdh-201ENSMUST00000097633 3232 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Skp2-201ENSMUST00000096482 3118 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Brat1-203ENSMUST00000110806 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Fam234b-201ENSMUST00000111915 4221 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Col4a4-201ENSMUST00000087050 10108 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC9.11□□□□□ -0.95
Usf3B2RUQ2 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Man2c1-201ENSMUST00000034836 3215 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Dhx34-204ENSMUST00000121123 3880 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm11560-201ENSMUST00000117567 948 ntBASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm24992-201ENSMUST00000157412 130 ntBASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm26976-201ENSMUST00000182929 908 ntBASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Calm5-202ENSMUST00000184271 423 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm31557-202ENSMUST00000213995 722 ntTSL 5 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Gm19046-201ENSMUST00000221263 1298 ntBASIC9.11□□□□□ -0.95
Usf3B2RUQ2 AC142266.1-201ENSMUST00000228107 415 ntBASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Scn5a-203ENSMUST00000120420 7536 ntAPPRIS ALT1 TSL 5 BASIC9.11□□□□□ -0.95
Usf3B2RUQ2 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Srrm4-202ENSMUST00000139425 2798 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 AC154528.2-201ENSMUST00000228432 3023 ntBASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Rab3c-202ENSMUST00000223922 2398 ntBASIC9.1□□□□□ -0.95
Usf3B2RUQ2 1700019D03Rik-202ENSMUST00000114492 3565 ntAPPRIS P1 TSL 3 BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Furin-202ENSMUST00000120753 4332 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Pdcd10-205ENSMUST00000161137 1927 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Ddx52-201ENSMUST00000049257 3194 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gpr37-202ENSMUST00000200812 3035 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gpsm1-201ENSMUST00000066889 3432 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Tfam-201ENSMUST00000092430 4167 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gm16219-201ENSMUST00000120096 274 ntBASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gm8876-201ENSMUST00000120768 1122 ntBASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gm14232-201ENSMUST00000137176 446 ntTSL 3 BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Slc1a3-208ENSMUST00000157065 728 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gm25226-201ENSMUST00000158198 123 ntBASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Fxyd5-203ENSMUST00000159924 805 ntAPPRIS P3 TSL 5 BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Fxyd5-210ENSMUST00000162116 817 ntAPPRIS P3 TSL 5 BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gm24954-201ENSMUST00000178831 110 ntBASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Mir133a-1hg-201ENSMUST00000179771 395 ntTSL 3 BASIC9.1□□□□□ -0.95
Usf3B2RUQ2 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gm37782-201ENSMUST00000194879 678 ntBASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Ighv1-2-201ENSMUST00000195325 378 ntBASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Gm45481-201ENSMUST00000209717 877 ntBASIC9.1□□□□□ -0.95
Usf3B2RUQ2 Rps2-ps12-201ENSMUST00000214262 785 ntBASIC9.1□□□□□ -0.95
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms