Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Carns1-201ENSMUST00000167055 3968 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Tctn3-201ENSMUST00000025981 2743 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Gm3755-201ENSMUST00000169555 1462 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Galm-201ENSMUST00000039205 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps54Q5SPW0 Eef1b2-204ENSMUST00000129339 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gpcpd1-202ENSMUST00000060955 3686 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm15984-202ENSMUST00000156466 1534 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Pde6c-202ENSMUST00000112329 2895 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Snx29-201ENSMUST00000096273 1622 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Rep15-201ENSMUST00000036194 1662 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm42858-201ENSMUST00000202512 1704 ntBASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Ifitm1-202ENSMUST00000106040 560 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Ifitm1-203ENSMUST00000106042 882 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm12745-201ENSMUST00000121767 214 ntBASIC13.03□□□□□ -0.32
Vps54Q5SPW0 9230111E07Rik-201ENSMUST00000124850 811 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Polr3c-205ENSMUST00000141377 808 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm13278-201ENSMUST00000177771 549 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm13275-201ENSMUST00000178347 549 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm13277-201ENSMUST00000178480 549 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm13279-201ENSMUST00000178602 549 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm13289-201ENSMUST00000179158 549 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm13276-201ENSMUST00000179372 549 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm13287-201ENSMUST00000179490 549 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm37852-201ENSMUST00000193027 350 ntBASIC13.03□□□□□ -0.32
Vps54Q5SPW0 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm5865-201ENSMUST00000198713 637 ntBASIC13.03□□□□□ -0.32
Vps54Q5SPW0 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 AC116680.1-201ENSMUST00000222804 613 ntTSL 3 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Ifitm1-201ENSMUST00000026564 736 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Cd247-205ENSMUST00000161559 1816 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 9430015G10Rik-202ENSMUST00000105576 1329 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Prnd-201ENSMUST00000110169 1918 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Chp1-202ENSMUST00000119172 3027 ntTSL 2 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Immt-206ENSMUST00000166975 2469 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Dnajb12-204ENSMUST00000146590 3070 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Hspa2-201ENSMUST00000080449 2524 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm42851-201ENSMUST00000201325 1411 ntBASIC13.03□□□□□ -0.32
Vps54Q5SPW0 AC125374.1-201ENSMUST00000213573 1400 ntBASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gys1-206ENSMUST00000211150 2681 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Arhgap24-203ENSMUST00000094559 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm19680-201ENSMUST00000095050 1513 ntBASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Ubap2l-215ENSMUST00000198322 3385 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gtf2ird1-206ENSMUST00000111244 3461 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gpc6-202ENSMUST00000088483 3488 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps54Q5SPW0 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Matn2-205ENSMUST00000227759 3569 ntAPPRIS ALT2 BASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Gm45041-201ENSMUST00000207366 3108 ntBASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Gm12530-201ENSMUST00000152074 1759 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Stk31-201ENSMUST00000024171 3237 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Slc17a8-202ENSMUST00000105295 1863 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps54Q5SPW0 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Dmrtc1b-201ENSMUST00000101324 1200 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Dmrtc1b-202ENSMUST00000113609 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Gm6758-201ENSMUST00000119643 1055 ntBASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 6820431F20Rik-201ENSMUST00000150051 936 ntBASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Gm9574-201ENSMUST00000173127 845 ntBASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Csrnp3-208ENSMUST00000176109 2958 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Scgb2b7-201ENSMUST00000178258 520 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Gm16755-201ENSMUST00000180595 933 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Olfr1358-201ENSMUST00000204477 1064 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Gm19990-201ENSMUST00000219468 1224 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 CT573086.4-201ENSMUST00000226729 342 ntBASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Gsto1-201ENSMUST00000026050 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Ctrl-201ENSMUST00000034368 879 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Vps54Q5SPW0 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms