Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb1P63158 Gsg1-203ENSMUST00000111910 1384 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Hmgb1P63158 Rps24-210ENSMUST00000225023 1613 ntAPPRIS P4 BASIC12.04□□□□□ -0.48
Hmgb1P63158 Slc2a5-201ENSMUST00000030826 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Wwp2-204ENSMUST00000212205 2758 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 D630029K05Rik-201ENSMUST00000033651 2133 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Ubap2-202ENSMUST00000108068 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Dlec1-208ENSMUST00000165231 5263 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
Hmgb1P63158 Rnf40-206ENSMUST00000206914 3735 ntTSL 5 BASIC12.04□□□□□ -0.48
Hmgb1P63158 Arap1-201ENSMUST00000084895 4404 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Zmat1-201ENSMUST00000064659 3501 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Pigc-205ENSMUST00000193784 4207 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Hmgb1P63158 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC12.04□□□□□ -0.48
Hmgb1P63158 Gm14314-201ENSMUST00000118225 1015 ntBASIC12.04□□□□□ -0.48
Hmgb1P63158 Gm9133-201ENSMUST00000118289 540 ntBASIC12.04□□□□□ -0.48
Hmgb1P63158 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC12.04□□□□□ -0.48
Hmgb1P63158 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC12.04□□□□□ -0.48
Hmgb1P63158 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC12.04□□□□□ -0.48
Hmgb1P63158 Mir8115-201ENSMUST00000184992 119 ntBASIC12.04□□□□□ -0.48
Hmgb1P63158 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Hmgb1P63158 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Hmgb1P63158 Gm37826-201ENSMUST00000195329 322 ntBASIC12.04□□□□□ -0.48
Hmgb1P63158 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC12.04□□□□□ -0.48
Hmgb1P63158 Gm18042-201ENSMUST00000219887 790 ntBASIC12.04□□□□□ -0.48
Hmgb1P63158 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Dclk1-213ENSMUST00000199702 2922 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Zer1-201ENSMUST00000044751 4100 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Sipa1l3-215ENSMUST00000183096 7713 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Hmgb1P63158 Sipa1l3-201ENSMUST00000085809 7713 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Hmgb1P63158 Atcayos-203ENSMUST00000150782 3057 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC12.04□□□□□ -0.48
Hmgb1P63158 Cmya5-201ENSMUST00000062122 11850 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Galr1-201ENSMUST00000065224 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Hipk2-204ENSMUST00000160360 3907 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb1P63158 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Hmgb1P63158 Fbxl18-202ENSMUST00000110766 7857 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Rtl1-201ENSMUST00000149046 6358 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Arfgef3-201ENSMUST00000019999 5606 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Rpgrip1-202ENSMUST00000111603 5380 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC12.03□□□□□ -0.48
Hmgb1P63158 Olfr707-205ENSMUST00000214112 1735 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Hmgb1P63158 Gtf3c6-206ENSMUST00000217537 2526 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Ccdc136-207ENSMUST00000154619 3356 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Hmgb1P63158 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Scn10a-204ENSMUST00000214408 5877 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm5878-201ENSMUST00000113802 4643 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 AC154171.2-201ENSMUST00000225219 2652 ntBASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm6335-201ENSMUST00000118081 1194 ntBASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm7816-201ENSMUST00000119884 1194 ntBASIC12.03□□□□□ -0.48
Hmgb1P63158 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm15542-201ENSMUST00000121585 1194 ntBASIC12.03□□□□□ -0.48
Hmgb1P63158 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm17709-201ENSMUST00000174536 1096 ntBASIC12.03□□□□□ -0.48
Hmgb1P63158 Mipep-ps-201ENSMUST00000177439 291 ntBASIC12.03□□□□□ -0.48
Hmgb1P63158 9930111H07Rik-201ENSMUST00000187270 821 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm3551-201ENSMUST00000190750 664 ntBASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm38319-201ENSMUST00000194537 1266 ntBASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm37905-201ENSMUST00000195310 341 ntBASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm43438-201ENSMUST00000198133 379 ntBASIC12.03□□□□□ -0.48
Hmgb1P63158 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC12.03□□□□□ -0.48
Hmgb1P63158 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC12.03□□□□□ -0.48
Hmgb1P63158 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
Hmgb1P63158 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC12.03□□□□□ -0.48
Hmgb1P63158 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Hmgb1P63158 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm10860-201ENSMUST00000176934 1888 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Colec12-201ENSMUST00000040069 3322 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm16677-201ENSMUST00000181229 2174 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm27174-201ENSMUST00000184493 2174 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Fam184b-201ENSMUST00000016023 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Ltbp1-203ENSMUST00000112516 5140 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm26541-201ENSMUST00000181866 3973 ntTSL 5 BASIC12.03□□□□□ -0.48
Hmgb1P63158 Gfra2-203ENSMUST00000227697 1323 ntBASIC12.03□□□□□ -0.48
Hmgb1P63158 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Chrm1-202ENSMUST00000163785 6271 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Zfp217-201ENSMUST00000063710 5685 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 C030037D09Rik-203ENSMUST00000138007 3220 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb1P63158 Gm44198-201ENSMUST00000203063 2636 ntBASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms