Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Adar-205ENSMUST00000121094 2321 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Zfp512-201ENSMUST00000076264 3299 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 AC156645.1-201ENSMUST00000223066 5194 ntBASIC8.94□□□□□ -0.98
Hmgb3O54879 Gm32200-201ENSMUST00000192778 2385 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Srpk1-204ENSMUST00000130643 4465 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Dpysl2-201ENSMUST00000022629 4520 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Elf5-206ENSMUST00000164172 2532 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Phf8-201ENSMUST00000046950 5728 ntAPPRIS ALT2 TSL 5 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Crebrf-203ENSMUST00000142539 2674 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Zbtb25-202ENSMUST00000176102 2707 ntAPPRIS P1 TSL 5 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Gm45495-201ENSMUST00000200940 1700 ntBASIC8.94□□□□□ -0.98
Hmgb3O54879 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Muc13-201ENSMUST00000023520 2942 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Pld5-203ENSMUST00000111167 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC8.94□□□□□ -0.98
Hmgb3O54879 Cpsf2-201ENSMUST00000047357 5732 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
Hmgb3O54879 Amph-201ENSMUST00000003345 3367 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Slc39a14-210ENSMUST00000152067 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 D030028A08Rik-202ENSMUST00000131501 3542 ntTSL 2 BASIC8.93□□□□□ -0.98
Hmgb3O54879 P4ha1-201ENSMUST00000009789 4043 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Mylk3-202ENSMUST00000121972 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Reps1-210ENSMUST00000164556 2537 ntAPPRIS ALT1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Specc1-208ENSMUST00000201624 2518 ntTSL 5 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Ssr1-201ENSMUST00000021864 9333 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Zfp940-202ENSMUST00000108223 2560 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Pax6-206ENSMUST00000111086 2601 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Zbtb8b-201ENSMUST00000053042 3288 ntAPPRIS P2 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Mast4-201ENSMUST00000099202 7709 ntAPPRIS ALT2 TSL 5 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Ptbp3-202ENSMUST00000102883 3409 ntAPPRIS P4 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Gpr35-202ENSMUST00000064480 3409 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Lig3-210ENSMUST00000173347 3631 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Ighv1-81-201ENSMUST00000103548 351 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Snord17-201ENSMUST00000104526 238 ntBASIC8.93□□□□□ -0.98
Hmgb3O54879 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Gm15824-201ENSMUST00000119516 955 ntBASIC8.93□□□□□ -0.98
Hmgb3O54879 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC8.93□□□□□ -0.98
Hmgb3O54879 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC8.93□□□□□ -0.98
Hmgb3O54879 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC8.93□□□□□ -0.98
Hmgb3O54879 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC8.93□□□□□ -0.98
Hmgb3O54879 Gm4857-201ENSMUST00000192718 785 ntBASIC8.93□□□□□ -0.98
Hmgb3O54879 Gm42588-201ENSMUST00000200538 1297 ntBASIC8.93□□□□□ -0.98
Hmgb3O54879 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Trio-210ENSMUST00000227337 6375 ntBASIC8.93□□□□□ -0.98
Hmgb3O54879 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Gm5537-201ENSMUST00000091117 1252 ntBASIC8.93□□□□□ -0.98
Hmgb3O54879 Itgal-203ENSMUST00000118405 3909 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Gm5525-201ENSMUST00000190438 1312 ntBASIC8.93□□□□□ -0.98
Hmgb3O54879 Vmn1r12-202ENSMUST00000226866 6639 ntAPPRIS P2 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Olfm3-202ENSMUST00000081752 4647 ntAPPRIS ALT1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Morf4l2-201ENSMUST00000033797 1996 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Sp100-201ENSMUST00000054279 1978 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Gckr-202ENSMUST00000201166 2272 ntAPPRIS ALT2 TSL 5 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Gm21817-201ENSMUST00000178584 2583 ntBASIC8.93□□□□□ -0.98
Hmgb3O54879 Ube2l3-201ENSMUST00000090192 2609 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Rab36-207ENSMUST00000147802 3291 ntAPPRIS P1 TSL 5 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Ap4m1-201ENSMUST00000019662 3479 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Kirrel3-201ENSMUST00000045091 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hmgb3O54879 Tyw3-204ENSMUST00000170461 4270 ntTSL 5 BASIC8.93□□□□□ -0.98
Hmgb3O54879 Cacna1c-213ENSMUST00000188078 6519 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Cacna1c-217ENSMUST00000188865 6519 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Slc1a4-202ENSMUST00000109594 3926 ntAPPRIS P2 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Eng-205ENSMUST00000167841 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Robo4-203ENSMUST00000115048 3392 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Arhgap17-202ENSMUST00000106442 3336 ntAPPRIS P4 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Ezr-201ENSMUST00000064234 3164 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Ppp1r3c-201ENSMUST00000087321 2719 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Gpatch8-206ENSMUST00000143842 6871 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Hoxa1-201ENSMUST00000000964 2251 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Gm40634-201ENSMUST00000214129 2001 ntTSL 5 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Olfr1121-202ENSMUST00000213792 1996 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Gm31938-201ENSMUST00000218081 1818 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Heatr5a-201ENSMUST00000040583 7763 ntAPPRIS P2 TSL 5 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Sim1-201ENSMUST00000020071 7355 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hmgb3O54879 Tmem67-202ENSMUST00000108293 3945 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Atp1a3-202ENSMUST00000102858 3895 ntTSL 2 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Hmgb3O54879 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Retrieved 100 of 76,532 protein–RNA pairs in 71 ms