Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Gm29331-201ENSMUST00000187215 605 ntTSL 5 BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Itgax-203ENSMUST00000205460 1215 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 AC165260.2-203ENSMUST00000224237 336 ntBASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 AC106830.1-201ENSMUST00000228032 1003 ntBASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Crisp4-201ENSMUST00000026876 1252 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Col9a1-201ENSMUST00000054588 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 n-R5s211-201ENSMUST00000093689 119 ntBASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Mapre2-203ENSMUST00000118826 3052 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Marveld2-201ENSMUST00000022137 3061 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Pop1-202ENSMUST00000079028 3275 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Ankrd46-201ENSMUST00000057486 2509 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Skp2-201ENSMUST00000096482 3118 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Ccdc167-203ENSMUST00000129091 2256 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Trappc9-202ENSMUST00000089770 4047 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Fga-202ENSMUST00000166581 2587 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Plekhb1-205ENSMUST00000107046 2793 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 BC035947-201ENSMUST00000170511 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Wbp1l-202ENSMUST00000111855 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Sh3rf1Q69ZI1 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Unkl-202ENSMUST00000039734 4779 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Cdh1-203ENSMUST00000167688 3203 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Rcbtb2-219ENSMUST00000169513 3622 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Dhx40-201ENSMUST00000018569 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Jmjd4-202ENSMUST00000108777 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Il16-203ENSMUST00000145610 3183 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 AC122382.1-201ENSMUST00000225869 2371 ntBASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Tram2-201ENSMUST00000037998 6492 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Gm3671-201ENSMUST00000182463 1007 ntBASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Gm19166-201ENSMUST00000196041 1063 ntBASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Olfr812-202ENSMUST00000203571 1232 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Gm6108-201ENSMUST00000208365 367 ntBASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Olfr1460-ps1-201ENSMUST00000208975 899 ntBASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Olfr1248-201ENSMUST00000216129 1078 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Traip-201ENSMUST00000049348 2706 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Tyro3-202ENSMUST00000110783 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Trp53inp2-201ENSMUST00000043237 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Pdcd10-205ENSMUST00000161137 1927 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Brat1-202ENSMUST00000100505 3431 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Cutal-203ENSMUST00000113068 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Ddah1-202ENSMUST00000120310 2291 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Gm43064-201ENSMUST00000199710 3144 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Cnr2-202ENSMUST00000097843 3867 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Sh3rf1Q69ZI1 Synpo2l-203ENSMUST00000119483 3696 ntTSL 1 (best) BASIC11.08□□□□□ -0.63
Sh3rf1Q69ZI1 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
Sh3rf1Q69ZI1 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Trim61-201ENSMUST00000078409 1977 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Kyat1-201ENSMUST00000044038 1876 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Wdr60-201ENSMUST00000039349 3721 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Arpp21-217ENSMUST00000161412 1687 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Lrpap1-201ENSMUST00000030986 2981 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Pex26-203ENSMUST00000120066 3861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Sgsm1-202ENSMUST00000057209 4339 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Slc45a4-202ENSMUST00000076224 4240 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Plekhg5-203ENSMUST00000105662 3933 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 4933405E24Rik-201ENSMUST00000131019 1078 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC11.08□□□□□ -0.64
Sh3rf1Q69ZI1 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms