Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.62
Sox1P53783 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Sox1P53783 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Sox1P53783 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Sox1P53783 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Sox1P53783 Gm37660-201ENSMUST00000192754 1732 ntBASIC11.21□□□□□ -0.62
Sox1P53783 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
Sox1P53783 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
Sox1P53783 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Lgals9-203ENSMUST00000108269 1586 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Prpf18-204ENSMUST00000152362 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Supt3-201ENSMUST00000050630 1508 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Mtch2-202ENSMUST00000111467 2281 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox1P53783 5031425E22Rik-202ENSMUST00000185943 1477 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox1P53783 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Gm5822-201ENSMUST00000161562 1378 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox1P53783 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox1P53783 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Gm22751-201ENSMUST00000102077 109 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Mir692-3-201ENSMUST00000102079 109 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Mir692-2-201ENSMUST00000102081 109 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC11.2□□□□□ -0.62
Sox1P53783 Clec4n-202ENSMUST00000112554 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Rhox3f-201ENSMUST00000115172 833 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Gm15539-201ENSMUST00000118452 566 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Gm12240-201ENSMUST00000120178 229 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Gm3880-201ENSMUST00000122154 337 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Sox1P53783 Gm12702-201ENSMUST00000123258 612 ntTSL 3 BASIC11.2□□□□□ -0.62
Sox1P53783 Dtx3-205ENSMUST00000137151 346 ntTSL 3 BASIC11.2□□□□□ -0.62
Sox1P53783 Gm15579-201ENSMUST00000141299 757 ntTSL 3 BASIC11.2□□□□□ -0.62
Sox1P53783 Anp32e-206ENSMUST00000169426 915 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox1P53783 Gm17107-201ENSMUST00000170983 553 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Gm5342-201ENSMUST00000181982 1003 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Rhox3f-203ENSMUST00000184451 1008 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Sox1P53783 1700063D05Rik-203ENSMUST00000191461 666 ntTSL 2 BASIC11.2□□□□□ -0.62
Sox1P53783 1110025M09Rik-201ENSMUST00000192082 855 ntBASIC11.2□□□□□ -0.62
Sox1P53783 4921527H02Rik-201ENSMUST00000196028 246 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Gm19080-201ENSMUST00000196082 550 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Gm42208-201ENSMUST00000198215 670 ntTSL 3 BASIC11.2□□□□□ -0.62
Sox1P53783 Gm34248-201ENSMUST00000200027 474 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Gm44159-201ENSMUST00000204065 442 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Gm44008-201ENSMUST00000204345 412 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Gm44196-203ENSMUST00000204359 1190 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Clec4n-206ENSMUST00000205129 363 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox1P53783 AC122891.1-201ENSMUST00000218671 268 ntBASIC11.2□□□□□ -0.62
Sox1P53783 CT009713.2-201ENSMUST00000225532 1149 ntBASIC11.2□□□□□ -0.62
Sox1P53783 AC154757.2-201ENSMUST00000228885 743 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Tspan8-202ENSMUST00000080630 1156 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Ptprm-203ENSMUST00000224091 3773 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Lin54-210ENSMUST00000154921 3734 ntTSL 5 BASIC11.2□□□□□ -0.62
Sox1P53783 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Gm11231-201ENSMUST00000117895 1706 ntBASIC11.2□□□□□ -0.62
Sox1P53783 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Gm33466-201ENSMUST00000199819 1689 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Sox1P53783 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Sox1P53783 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Sox1P53783 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC11.19□□□□□ -0.62
Sox1P53783 Olfr434-203ENSMUST00000216562 1318 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Sox1P53783 Rbm8a-201ENSMUST00000048915 2608 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 AC113282.1-201ENSMUST00000225278 1707 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Sox1P53783 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Fhl1-206ENSMUST00000116596 1203 ntTSL 5 BASIC11.19□□□□□ -0.62
Sox1P53783 Gm12439-201ENSMUST00000117162 365 ntBASIC11.19□□□□□ -0.62
Sox1P53783 Wdr17-204ENSMUST00000129132 1043 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Faap24-203ENSMUST00000154597 831 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
Sox1P53783 Baat-202ENSMUST00000166036 1263 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
Sox1P53783 Omt2b-203ENSMUST00000187667 727 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Gm44460-201ENSMUST00000196179 129 ntBASIC11.19□□□□□ -0.62
Sox1P53783 Gm42875-201ENSMUST00000197674 1015 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Gm42952-204ENSMUST00000198572 408 ntTSL 3 BASIC11.19□□□□□ -0.62
Sox1P53783 Gm33080-201ENSMUST00000205429 172 ntBASIC11.19□□□□□ -0.62
Sox1P53783 Rps25-205ENSMUST00000216867 577 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 AC130217.1-201ENSMUST00000224146 909 ntBASIC11.19□□□□□ -0.62
Sox1P53783 AC174647.1-201ENSMUST00000227419 1271 ntBASIC11.19□□□□□ -0.62
Sox1P53783 Cst13-201ENSMUST00000046589 783 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Sox1P53783 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms