Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Elovl7-201ENSMUST00000022207 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Icam1-201ENSMUST00000086399 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Gm6641-201ENSMUST00000196100 1315 ntBASIC12.66□□□□□ -0.38
Traf1P39428 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC12.66□□□□□ -0.38
Traf1P39428 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Traf1P39428 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Cfap61-201ENSMUST00000116398 1561 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Traf1P39428 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Prr5l-210ENSMUST00000171088 4296 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Traf1P39428 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Gm11502-201ENSMUST00000120917 1211 ntBASIC12.66□□□□□ -0.38
Traf1P39428 Gm5257-201ENSMUST00000121823 790 ntBASIC12.66□□□□□ -0.38
Traf1P39428 Gm13981-201ENSMUST00000122360 447 ntBASIC12.66□□□□□ -0.38
Traf1P39428 Mir1893-201ENSMUST00000122565 83 ntBASIC12.66□□□□□ -0.38
Traf1P39428 Sbsn-205ENSMUST00000182721 677 ntAPPRIS ALT2 TSL 3 BASIC12.66□□□□□ -0.38
Traf1P39428 Mir8091-201ENSMUST00000183602 139 ntBASIC12.66□□□□□ -0.38
Traf1P39428 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC12.66□□□□□ -0.38
Traf1P39428 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC12.66□□□□□ -0.38
Traf1P39428 Mrpl30-207ENSMUST00000195373 587 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Traf1P39428 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Gstz1-203ENSMUST00000220574 971 ntTSL 2 BASIC12.66□□□□□ -0.38
Traf1P39428 Cxcl1-201ENSMUST00000031327 953 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Dopey2-207ENSMUST00000227156 7340 ntBASIC12.66□□□□□ -0.38
Traf1P39428 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Mphosph10-201ENSMUST00000032735 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Supt3-201ENSMUST00000050630 1508 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Rps6ka6-204ENSMUST00000113428 4135 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Traf1P39428 Mab21l1-201ENSMUST00000075422 2492 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Traf1P39428 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Cage1-201ENSMUST00000074969 2856 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Traf1P39428 Lamc2-203ENSMUST00000185356 4916 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Pdgfrb-201ENSMUST00000025522 5407 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC12.66□□□□□ -0.38
Traf1P39428 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Traf1P39428 Uaca-201ENSMUST00000050183 4428 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC12.65□□□□□ -0.38
Traf1P39428 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Traf1P39428 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 AC113282.5-201ENSMUST00000224330 1679 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Traf1P39428 Adam20-201ENSMUST00000056331 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Katnal2-205ENSMUST00000126153 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC12.65□□□□□ -0.38
Traf1P39428 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Traf1P39428 Pfn1-202ENSMUST00000108549 608 ntTSL 2 BASIC12.65□□□□□ -0.38
Traf1P39428 Fmr1nb-203ENSMUST00000114647 679 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC12.65□□□□□ -0.38
Traf1P39428 Smim11-202ENSMUST00000118064 782 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
Traf1P39428 Gm13326-201ENSMUST00000118730 1011 ntBASIC12.65□□□□□ -0.38
Traf1P39428 Gm15620-201ENSMUST00000122949 270 ntBASIC12.65□□□□□ -0.38
Traf1P39428 Myl3-202ENSMUST00000124267 575 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Traf1P39428 Lrrc75aos2-202ENSMUST00000128647 1227 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Gm13783-201ENSMUST00000131634 732 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Polr3c-205ENSMUST00000141377 808 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Gm13572-201ENSMUST00000153675 559 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Gm16167-201ENSMUST00000160428 1065 ntBASIC12.65□□□□□ -0.38
Traf1P39428 Gm7719-201ENSMUST00000182374 975 ntBASIC12.65□□□□□ -0.38
Traf1P39428 Gm31274-201ENSMUST00000197356 229 ntBASIC12.65□□□□□ -0.38
Traf1P39428 Gm5302-201ENSMUST00000202130 796 ntBASIC12.65□□□□□ -0.38
Traf1P39428 Gm31520-203ENSMUST00000204874 647 ntTSL 3 BASIC12.65□□□□□ -0.38
Traf1P39428 Gm18042-201ENSMUST00000219887 790 ntBASIC12.65□□□□□ -0.38
Traf1P39428 Acyp1-201ENSMUST00000008966 648 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Gm8325-201ENSMUST00000099086 453 ntBASIC12.65□□□□□ -0.38
Traf1P39428 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Traf1P39428 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Traf1P39428 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Traf1P39428 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC12.65□□□□□ -0.38
Traf1P39428 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Traf1P39428 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Traf1P39428 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC12.65□□□□□ -0.38
Traf1P39428 Pdp2-201ENSMUST00000059588 5692 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Ppp2r2cos-201ENSMUST00000152862 1491 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Traf1P39428 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Traf1P39428 Cwc25-202ENSMUST00000107579 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Traf1P39428 AC090962.2-201ENSMUST00000225064 1801 ntBASIC12.65□□□□□ -0.39
Traf1P39428 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Traf1P39428 Nudt7-203ENSMUST00000109109 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 C4a-207ENSMUST00000160679 5371 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms