Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Stat5a-202ENSMUST00000107356 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Hmgcll1-201ENSMUST00000008052 3737 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Thbd-201ENSMUST00000099270 3723 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Usp4P35123 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Polh-201ENSMUST00000024749 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Anks1b-233ENSMUST00000183156 4248 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Usp4P35123 Il33-202ENSMUST00000120388 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Fndc7-207ENSMUST00000180063 4820 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Usp4P35123 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Katnal2-208ENSMUST00000137498 1824 ntTSL 5 BASIC11.44□□□□□ -0.58
Usp4P35123 Mov10l1-203ENSMUST00000146993 4133 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Usp4P35123 S1pr2-201ENSMUST00000054197 6394 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Elovl5-201ENSMUST00000034904 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Bace1-202ENSMUST00000078111 4041 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Usp4P35123 C1rl-201ENSMUST00000049124 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Zkscan6-201ENSMUST00000018491 2302 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Lrba-202ENSMUST00000192145 8843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Specc1-208ENSMUST00000201624 2518 ntTSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 Gm21998-201ENSMUST00000117552 1308 ntBASIC11.43□□□□□ -0.58
Usp4P35123 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 Mylk3-202ENSMUST00000121972 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC11.43□□□□□ -0.58
Usp4P35123 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Gm12795-201ENSMUST00000117594 539 ntBASIC11.43□□□□□ -0.58
Usp4P35123 Thegl-203ENSMUST00000118941 746 ntTSL 3 BASIC11.43□□□□□ -0.58
Usp4P35123 Gm14585-201ENSMUST00000120713 634 ntBASIC11.43□□□□□ -0.58
Usp4P35123 Gm12516-201ENSMUST00000120819 385 ntBASIC11.43□□□□□ -0.58
Usp4P35123 Gm8737-201ENSMUST00000122208 642 ntBASIC11.43□□□□□ -0.58
Usp4P35123 Rab7b-205ENSMUST00000136247 497 ntTSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Hpcal4-201ENSMUST00000059667 4931 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Sh3gl2-204ENSMUST00000107189 3231 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Tra2b-204ENSMUST00000161286 3403 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Tmem67-202ENSMUST00000108293 3945 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 Syt15-201ENSMUST00000035351 3623 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Dip2a-205ENSMUST00000160048 6551 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 Cdca2-207ENSMUST00000163100 3841 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 Slc5a9-201ENSMUST00000102719 2460 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC11.43□□□□□ -0.58
Usp4P35123 Lpxn-201ENSMUST00000025601 1675 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Ly6e-202ENSMUST00000169343 2154 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Usp4P35123 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Gbp3-201ENSMUST00000029935 2681 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp4P35123 Gtf3c1-201ENSMUST00000055506 6961 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Rnf144b-201ENSMUST00000068891 4640 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Snapc1-201ENSMUST00000021532 6275 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Fga-202ENSMUST00000166581 2587 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Usp4P35123 Dgkh-201ENSMUST00000074729 3967 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Usp4P35123 Ap4m1-201ENSMUST00000019662 3479 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Elmo2-201ENSMUST00000071699 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 AW549877-201ENSMUST00000046633 5076 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Cct3-201ENSMUST00000001452 1977 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC11.42□□□□□ -0.58
Usp4P35123 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Usp4P35123 Gm11956-201ENSMUST00000119525 512 ntBASIC11.42□□□□□ -0.58
Usp4P35123 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Gm28032-201ENSMUST00000184104 96 ntBASIC11.42□□□□□ -0.58
Usp4P35123 Gm28324-201ENSMUST00000187913 264 ntBASIC11.42□□□□□ -0.58
Usp4P35123 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Usp4P35123 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC11.42□□□□□ -0.58
Usp4P35123 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC11.42□□□□□ -0.58
Usp4P35123 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Usp4P35123 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC11.42□□□□□ -0.58
Usp4P35123 Gm5996-201ENSMUST00000211110 718 ntBASIC11.42□□□□□ -0.58
Usp4P35123 Gm40639-201ENSMUST00000214642 625 ntTSL 5 BASIC11.42□□□□□ -0.58
Usp4P35123 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Gm364-201ENSMUST00000114725 2156 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
Usp4P35123 Gm37264-201ENSMUST00000194916 2192 ntBASIC11.42□□□□□ -0.58
Usp4P35123 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Gm5159-201ENSMUST00000212733 1652 ntBASIC11.42□□□□□ -0.58
Usp4P35123 Cdh1-203ENSMUST00000167688 3203 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Usp4P35123 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC11.42□□□□□ -0.58
Usp4P35123 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 Mybph-201ENSMUST00000038445 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp4P35123 4732487G21Rik-201ENSMUST00000181495 2664 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms