Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Fam220-ps-201ENSMUST00000116535 783 ntBASIC16.54■□□□□ 0.24
Cux1P53564 Shf-205ENSMUST00000121237 882 ntTSL 3 BASIC16.54■□□□□ 0.24
Cux1P53564 Gm15419-201ENSMUST00000148654 743 ntTSL 3 BASIC16.54■□□□□ 0.24
Cux1P53564 D430040D24Rik-201ENSMUST00000149224 910 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Eif5a-212ENSMUST00000153652 840 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Gm16268-201ENSMUST00000159445 1157 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Gm28499-201ENSMUST00000191576 666 ntTSL 2 BASIC16.54■□□□□ 0.24
Cux1P53564 Gm40153-201ENSMUST00000197904 637 ntTSL 3 BASIC16.54■□□□□ 0.24
Cux1P53564 1700113A16Rik-203ENSMUST00000200006 563 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 AC157650.1-201ENSMUST00000224582 610 ntBASIC16.54■□□□□ 0.24
Cux1P53564 AC123533.3-201ENSMUST00000228056 454 ntBASIC16.54■□□□□ 0.24
Cux1P53564 Mir341-201ENSMUST00000093593 96 ntBASIC16.54■□□□□ 0.24
Cux1P53564 Plekhg5-203ENSMUST00000105662 3933 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Cux1P53564 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC16.53■□□□□ 0.24
Cux1P53564 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Wbp1l-204ENSMUST00000138302 3900 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Spns3-201ENSMUST00000021154 1804 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Epx-201ENSMUST00000049768 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 1700048O20Rik-202ENSMUST00000214777 1900 ntTSL 3 BASIC16.53■□□□□ 0.24
Cux1P53564 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Lin54-210ENSMUST00000154921 3734 ntTSL 5 BASIC16.53■□□□□ 0.24
Cux1P53564 Gm10842-201ENSMUST00000100338 369 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Cux1P53564 Wfdc2-203ENSMUST00000109345 558 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
Cux1P53564 Gm11929-201ENSMUST00000118175 945 ntBASIC16.53■□□□□ 0.24
Cux1P53564 Gm16193-201ENSMUST00000125903 778 ntTSL 3 BASIC16.53■□□□□ 0.24
Cux1P53564 Gm22388-201ENSMUST00000158194 248 ntBASIC16.53■□□□□ 0.24
Cux1P53564 Gm26356-201ENSMUST00000158217 283 ntBASIC16.53■□□□□ 0.24
Cux1P53564 Ubl5-203ENSMUST00000160124 501 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Cux1P53564 BC025446-202ENSMUST00000185307 758 ntAPPRIS P5 TSL 2 BASIC16.53■□□□□ 0.24
Cux1P53564 Med11-201ENSMUST00000019067 902 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Gm34983-202ENSMUST00000220432 494 ntTSL 3 BASIC16.53■□□□□ 0.24
Cux1P53564 CT025642.1-201ENSMUST00000224734 1219 ntBASIC16.53■□□□□ 0.24
Cux1P53564 AC174647.1-201ENSMUST00000227419 1271 ntBASIC16.53■□□□□ 0.24
Cux1P53564 Tceanc2-203ENSMUST00000058585 766 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Cux1P53564 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Stxbp4-203ENSMUST00000107875 1660 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cux1P53564 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Bpifb1-201ENSMUST00000028987 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Klk13-201ENSMUST00000066834 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Mx2-202ENSMUST00000188251 2421 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Cux1P53564 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Timm10b-203ENSMUST00000106783 3273 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
Cux1P53564 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Cux1P53564 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Morf4l2-215ENSMUST00000169418 1782 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
Cux1P53564 Lims1-201ENSMUST00000020077 1565 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Ighv1-62-3-201ENSMUST00000103532 405 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Cux1P53564 Gm11569-201ENSMUST00000105057 869 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Cux1P53564 Gm8216-201ENSMUST00000117232 601 ntBASIC16.52■□□□□ 0.24
Cux1P53564 Gm14341-201ENSMUST00000154616 667 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Gm1758-201ENSMUST00000164528 606 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Cux1P53564 Mir6934-201ENSMUST00000183965 62 ntBASIC16.52■□□□□ 0.24
Cux1P53564 Gm29487-201ENSMUST00000190146 256 ntBASIC16.52■□□□□ 0.24
Cux1P53564 1700052H01Rik-201ENSMUST00000196142 717 ntTSL 3 BASIC16.52■□□□□ 0.24
Cux1P53564 Ighv1-86-201ENSMUST00000200562 353 ntBASIC16.52■□□□□ 0.24
Cux1P53564 Gm44017-201ENSMUST00000203231 740 ntTSL 5 BASIC16.52■□□□□ 0.24
Cux1P53564 Prss23os-203ENSMUST00000208814 975 ntTSL 5 BASIC16.52■□□□□ 0.24
Cux1P53564 Prss23os-204ENSMUST00000209064 972 ntTSL 5 BASIC16.52■□□□□ 0.24
Cux1P53564 AC134860.5-201ENSMUST00000225071 1249 ntBASIC16.52■□□□□ 0.24
Cux1P53564 Lig3-212ENSMUST00000173727 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Cux1P53564 CN725425-201ENSMUST00000109284 1929 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Cux1P53564 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Cux1P53564 Vmn2r18-201ENSMUST00000165928 2367 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Cux1P53564 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cux1P53564 Clip1-202ENSMUST00000063905 4589 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Cux1P53564 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
Cux1P53564 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Cav2-203ENSMUST00000115462 694 ntTSL 5 BASIC16.51■□□□□ 0.23
Cux1P53564 Gm8707-201ENSMUST00000183325 980 ntBASIC16.51■□□□□ 0.23
Cux1P53564 CAAA01125382.3-201ENSMUST00000215277 643 ntBASIC16.51■□□□□ 0.23
Cux1P53564 AC161877.1-201ENSMUST00000227736 699 ntBASIC16.51■□□□□ 0.23
Cux1P53564 Olfr1384-201ENSMUST00000060434 1034 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Cux1P53564 Gm8991-201ENSMUST00000073014 1075 ntBASIC16.51■□□□□ 0.23
Cux1P53564 Hcst-201ENSMUST00000075062 442 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Ccdc162-212ENSMUST00000219054 3182 ntTSL 5 BASIC16.51■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 78.5 ms