Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm21817-201ENSMUST00000178584 2583 ntBASIC13□□□□□ -0.33
Rfx1P48377 Vps33a-201ENSMUST00000031388 4235 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC13□□□□□ -0.33
Rfx1P48377 Myo18a-224ENSMUST00000172303 6339 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Snapc1-201ENSMUST00000021532 6275 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Rfx1P48377 Ern1-201ENSMUST00000001059 6946 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Adgre5-202ENSMUST00000075843 3000 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Zfp775-203ENSMUST00000204095 4143 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Rfx1P48377 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Rfx1P48377 Btc-201ENSMUST00000121044 2876 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Itgax-201ENSMUST00000033053 4046 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Serpinb9c-202ENSMUST00000110284 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Gm29895-201ENSMUST00000209933 5652 ntTSL 5 BASIC12.99□□□□□ -0.33
Rfx1P48377 Mov10-203ENSMUST00000106775 3584 ntTSL 5 BASIC12.99□□□□□ -0.33
Rfx1P48377 Mov10-206ENSMUST00000166979 3584 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Zfp366-201ENSMUST00000056558 6382 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Prkx-201ENSMUST00000036333 4146 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
Rfx1P48377 Gm12570-201ENSMUST00000122047 1030 ntBASIC12.99□□□□□ -0.33
Rfx1P48377 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC12.99□□□□□ -0.33
Rfx1P48377 Gm25492-201ENSMUST00000157383 129 ntBASIC12.99□□□□□ -0.33
Rfx1P48377 Gm22885-201ENSMUST00000157410 107 ntBASIC12.99□□□□□ -0.33
Rfx1P48377 Gm9639-201ENSMUST00000172205 678 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Rfx1P48377 Gm28975-201ENSMUST00000186412 686 ntBASIC12.99□□□□□ -0.33
Rfx1P48377 Gm29283-201ENSMUST00000187394 288 ntTSL 5 BASIC12.99□□□□□ -0.33
Rfx1P48377 Gm19331-201ENSMUST00000193799 1092 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Gm44506-201ENSMUST00000206278 965 ntBASIC12.99□□□□□ -0.33
Rfx1P48377 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Ntng1-201ENSMUST00000051253 327 ntBASIC12.99□□□□□ -0.33
Rfx1P48377 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Olfr584-201ENSMUST00000098210 964 ntBASIC12.99□□□□□ -0.33
Rfx1P48377 Gtf3c2-201ENSMUST00000088010 4552 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 C230021G24Rik-201ENSMUST00000181196 3679 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 9630001P10Rik-201ENSMUST00000181083 2799 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Myo18a-208ENSMUST00000108375 7513 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Rfx1P48377 Lasp1-201ENSMUST00000043843 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Zbtb21-202ENSMUST00000063605 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Brat1-202ENSMUST00000100505 3431 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Prg4-201ENSMUST00000006171 1869 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Mgat5-201ENSMUST00000038361 8436 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Arhgap24-202ENSMUST00000073302 3151 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Inpp5b-201ENSMUST00000094782 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Cdkal1-202ENSMUST00000091674 2427 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Ap1m2-201ENSMUST00000003397 1706 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Pax3-201ENSMUST00000004994 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rfx1P48377 Cep112-201ENSMUST00000061287 3485 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Rfx1P48377 Mpp1-202ENSMUST00000114091 1558 ntTSL 2 BASIC12.98□□□□□ -0.33
Rfx1P48377 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Uroc1-201ENSMUST00000046128 3370 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Exoc7-203ENSMUST00000106413 3298 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
Rfx1P48377 Syt11-203ENSMUST00000107505 5020 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 CT025645.2-201ENSMUST00000223278 3827 ntBASIC12.98□□□□□ -0.33
Rfx1P48377 Gm43064-201ENSMUST00000199710 3144 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Rfx1P48377 Lig3-212ENSMUST00000173727 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Gm26527-201ENSMUST00000180416 1948 ntTSL 5 BASIC12.98□□□□□ -0.33
Rfx1P48377 Pard3-201ENSMUST00000026921 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Ltbp1-203ENSMUST00000112516 5140 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
Rfx1P48377 Aqr-202ENSMUST00000102543 4352 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Arhgap17-202ENSMUST00000106442 3336 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Gm14193-201ENSMUST00000105067 153 ntBASIC12.98□□□□□ -0.33
Rfx1P48377 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Gm15528-201ENSMUST00000117821 864 ntBASIC12.98□□□□□ -0.33
Rfx1P48377 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC12.98□□□□□ -0.33
Rfx1P48377 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC12.98□□□□□ -0.33
Rfx1P48377 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Rfx1P48377 Pid1-205ENSMUST00000176720 450 ntTSL 5 BASIC12.98□□□□□ -0.33
Rfx1P48377 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Rfx1P48377 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Rfx1P48377 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Rfx1P48377 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Rfx1P48377 Gm28032-201ENSMUST00000184104 96 ntBASIC12.98□□□□□ -0.33
Rfx1P48377 Gm37246-201ENSMUST00000192665 835 ntBASIC12.98□□□□□ -0.33
Rfx1P48377 Gm38319-201ENSMUST00000194537 1266 ntBASIC12.98□□□□□ -0.33
Rfx1P48377 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
Rfx1P48377 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC12.98□□□□□ -0.33
Rfx1P48377 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC12.98□□□□□ -0.33
Rfx1P48377 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC12.98□□□□□ -0.33
Rfx1P48377 Gm35638-201ENSMUST00000220724 652 ntBASIC12.98□□□□□ -0.33
Rfx1P48377 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Rfx1P48377 Ccdc63-201ENSMUST00000058960 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Smpd4-218ENSMUST00000170273 2166 ntTSL 5 BASIC12.98□□□□□ -0.33
Rfx1P48377 Ank3-220ENSMUST00000182439 2586 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 C1rl-201ENSMUST00000049124 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Ubap2-202ENSMUST00000108068 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Gpatch2-204ENSMUST00000110943 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Zfp672-201ENSMUST00000057836 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Stard4-201ENSMUST00000025236 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 C1rb-201ENSMUST00000184647 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Fam161a-201ENSMUST00000058269 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rfx1P48377 Vcan-202ENSMUST00000109544 5702 ntTSL 5 BASIC12.97□□□□□ -0.33
Rfx1P48377 Gm29773-201ENSMUST00000212751 1895 ntTSL 2 BASIC12.97□□□□□ -0.33
Rfx1P48377 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms