Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm17070-201ENSMUST00000170463 784 ntBASIC12.69□□□□□ -0.38
Traf1P39428 Gm26272-201ENSMUST00000179241 132 ntBASIC12.69□□□□□ -0.38
Traf1P39428 B230110C06Rik-201ENSMUST00000181388 1274 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 4933417D19Rik-201ENSMUST00000181432 1229 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Gm5621-201ENSMUST00000187303 640 ntBASIC12.69□□□□□ -0.38
Traf1P39428 1700084F23Rik-202ENSMUST00000188461 747 ntTSL 3 BASIC12.69□□□□□ -0.38
Traf1P39428 Gm34379-201ENSMUST00000195036 290 ntBASIC12.69□□□□□ -0.38
Traf1P39428 Gm42430-201ENSMUST00000197209 616 ntBASIC12.69□□□□□ -0.38
Traf1P39428 Gm7880-201ENSMUST00000203748 871 ntBASIC12.69□□□□□ -0.38
Traf1P39428 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Saa-ps-201ENSMUST00000211148 320 ntBASIC12.69□□□□□ -0.38
Traf1P39428 AC134793.1-202ENSMUST00000227444 803 ntBASIC12.69□□□□□ -0.38
Traf1P39428 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Traf1P39428 Olfr525-201ENSMUST00000078103 1050 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Traf1P39428 Taar7a-201ENSMUST00000078532 1077 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Traf1P39428 Taar7b-201ENSMUST00000092658 1077 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Traf1P39428 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Cuzd1-201ENSMUST00000046611 2256 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC12.69□□□□□ -0.38
Traf1P39428 Rxfp2-206ENSMUST00000201612 2470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Traf1P39428 Cops3-201ENSMUST00000019517 1646 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Knop1-202ENSMUST00000063607 4884 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 A230009B12Rik-202ENSMUST00000159602 1810 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Cpeb1-209ENSMUST00000178892 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Traf1P39428 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Traf1P39428 Gsg1-203ENSMUST00000111910 1384 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Traf1P39428 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
Traf1P39428 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Traf1P39428 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Bet1-201ENSMUST00000049166 1516 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Tmc7-201ENSMUST00000044195 4546 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Gm12969-201ENSMUST00000120199 1004 ntBASIC12.68□□□□□ -0.38
Traf1P39428 2210406O10Rik-203ENSMUST00000149687 1198 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Gm24074-201ENSMUST00000158178 260 ntBASIC12.68□□□□□ -0.38
Traf1P39428 Dusp3-207ENSMUST00000176261 496 ntTSL 3 BASIC12.68□□□□□ -0.38
Traf1P39428 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 AC154176.1-201ENSMUST00000225897 220 ntBASIC12.68□□□□□ -0.38
Traf1P39428 Gm9758-201ENSMUST00000035980 1167 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 4930572O03Rik-201ENSMUST00000092696 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Gm26737-201ENSMUST00000181106 2151 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Gm44415-201ENSMUST00000204151 2112 ntBASIC12.68□□□□□ -0.38
Traf1P39428 Gm35850-202ENSMUST00000211705 2120 ntBASIC12.68□□□□□ -0.38
Traf1P39428 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC12.68□□□□□ -0.38
Traf1P39428 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Traf1P39428 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
Traf1P39428 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Traf1P39428 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Traf1P39428 1700030K09Rik-202ENSMUST00000121902 2373 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Traf1P39428 Dennd1c-201ENSMUST00000011623 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC12.67□□□□□ -0.38
Traf1P39428 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Rdh11-201ENSMUST00000085254 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 1810019N24Rik-201ENSMUST00000181128 1474 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Adgrv1-214ENSMUST00000224088 1492 ntBASIC12.67□□□□□ -0.38
Traf1P39428 Ppp1r32-201ENSMUST00000038842 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Armcx4-201ENSMUST00000124226 7996 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Traf1P39428 Gm11554-201ENSMUST00000105056 890 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Traf1P39428 Gm11996-201ENSMUST00000117538 915 ntBASIC12.67□□□□□ -0.38
Traf1P39428 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Gm17606-201ENSMUST00000169818 234 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Traf1P39428 Gm43969-201ENSMUST00000204833 535 ntBASIC12.67□□□□□ -0.38
Traf1P39428 Gm45388-201ENSMUST00000209922 1132 ntTSL 5 BASIC12.67□□□□□ -0.38
Traf1P39428 Gm46224-201ENSMUST00000220221 1242 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Prss51-204ENSMUST00000224112 1042 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Traf1P39428 Eif4ebp3-201ENSMUST00000036765 744 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Cib4-201ENSMUST00000065486 769 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Myh2-201ENSMUST00000018641 6018 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Traf1P39428 AC125374.1-201ENSMUST00000213573 1400 ntBASIC12.67□□□□□ -0.38
Traf1P39428 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC12.67□□□□□ -0.38
Traf1P39428 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC12.67□□□□□ -0.38
Traf1P39428 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Gm19027-201ENSMUST00000187291 1355 ntBASIC12.67□□□□□ -0.38
Traf1P39428 Fbp2-201ENSMUST00000021907 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Zfp872-201ENSMUST00000091508 1395 ntTSL 5 BASIC12.67□□□□□ -0.38
Traf1P39428 Schip1-202ENSMUST00000169909 1517 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Traf1P39428 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 79.6 ms