Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm34973-201ENSMUST00000217087 572 ntTSL 3 BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 AC155245.1-201ENSMUST00000222266 1804 ntBASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Usp45-201ENSMUST00000040429 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Ipo4-201ENSMUST00000047131 3846 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Olfr1395-201ENSMUST00000059379 954 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Tnk2-204ENSMUST00000115123 4225 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Cdca2-207ENSMUST00000163100 3841 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Dchs1-201ENSMUST00000078482 10754 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Nr4a2-201ENSMUST00000028166 3568 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Ap2b1-201ENSMUST00000018875 5625 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Cdc40Q9DC48 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Nhsl1-202ENSMUST00000100054 6795 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Pcdh11x-202ENSMUST00000113358 8607 ntAPPRIS P2 TSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Pde2a-201ENSMUST00000163751 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 5033428I22Rik-204ENSMUST00000210633 6652 ntTSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Sec22c-201ENSMUST00000078547 5713 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Baiap3-206ENSMUST00000182825 3862 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm12218-201ENSMUST00000117666 399 ntBASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm11801-201ENSMUST00000117807 746 ntBASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm25492-201ENSMUST00000157383 129 ntBASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm23218-201ENSMUST00000158124 276 ntBASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm10100-201ENSMUST00000179726 363 ntAPPRIS P1 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm29067-201ENSMUST00000190821 470 ntBASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm43163-201ENSMUST00000196571 442 ntBASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Itgax-203ENSMUST00000205460 1215 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 CT025602.2-201ENSMUST00000226553 772 ntBASIC10.19□□□□□ -0.78
Cdc40Q9DC48 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm45532-201ENSMUST00000210342 3620 ntBASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Arhgef7-203ENSMUST00000098938 4628 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Fbxl18-202ENSMUST00000110766 7857 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Eif2ak4-201ENSMUST00000005233 5212 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Slc1a4-202ENSMUST00000109594 3926 ntAPPRIS P2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Rhoj-203ENSMUST00000118966 4892 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Clip1-202ENSMUST00000063905 4589 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Mical1-203ENSMUST00000119962 3565 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Samd4-206ENSMUST00000137543 6874 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdc40Q9DC48 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Dysf-204ENSMUST00000113821 6803 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Setd1b-201ENSMUST00000056053 7362 ntAPPRIS P2 TSL 5 BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Arap1-201ENSMUST00000084895 4404 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Pask-201ENSMUST00000027493 5779 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Gm29245-201ENSMUST00000187332 1416 ntBASIC10.18□□□□□ -0.78
Cdc40Q9DC48 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 97.4 ms