Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm6439-201ENSMUST00000199849 862 ntBASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 CT009546.1-201ENSMUST00000222573 1120 ntBASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Ppp1r12a-205ENSMUST00000219263 3355 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Tmc5-203ENSMUST00000121715 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Carns1-201ENSMUST00000167055 3968 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 AC154537.1-201ENSMUST00000226101 1304 ntBASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Ap1b1-201ENSMUST00000009234 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 P2ry1-202ENSMUST00000193201 3614 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Rnf40-201ENSMUST00000033088 3906 ntTSL 5 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Ncam1-203ENSMUST00000192584 2525 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Abl2-202ENSMUST00000166172 10151 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Rpgrip1-202ENSMUST00000111603 5380 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Fcgbp-203ENSMUST00000138392 7926 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Fcgbp-201ENSMUST00000076648 7928 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
Smc1aQ9CU62 Pdp2-201ENSMUST00000059588 5692 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Bdh1-203ENSMUST00000115227 3122 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Prpf40b-202ENSMUST00000118287 3129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Tmprss2-201ENSMUST00000000395 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Tank-203ENSMUST00000112495 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Ppp1r17-201ENSMUST00000052827 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Crebrf-203ENSMUST00000142539 2674 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Gm26672-201ENSMUST00000180922 2685 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Arhgef2-231ENSMUST00000177498 3966 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Ptprg-201ENSMUST00000022264 9213 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Phip-201ENSMUST00000034787 10756 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Mkks-202ENSMUST00000110089 3178 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC12.28□□□□□ -0.44
Smc1aQ9CU62 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Gm23105-201ENSMUST00000083719 134 ntBASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 1700018A04Rik-204ENSMUST00000221561 2569 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Zfp174-201ENSMUST00000041778 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Esr2-205ENSMUST00000218621 3342 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Epx-201ENSMUST00000049768 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Smok3a-201ENSMUST00000085886 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Ppp4r1l-ps-202ENSMUST00000132669 2767 ntBASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Fmod-201ENSMUST00000048183 3120 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Tnip1-206ENSMUST00000108889 2834 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Gm29895-201ENSMUST00000209933 5652 ntTSL 5 BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Klhl3-201ENSMUST00000091583 6871 ntTSL 5 BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Smc1aQ9CU62 Muc13-201ENSMUST00000023520 2942 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Smc1aQ9CU62 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC12.27□□□□□ -0.44
Smc1aQ9CU62 Fnbp1l-201ENSMUST00000162409 5198 ntTSL 5 BASIC12.27□□□□□ -0.44
Smc1aQ9CU62 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Smc1aQ9CU62 Ankub1-202ENSMUST00000197088 1854 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Smc1aQ9CU62 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Smc1aQ9CU62 Scn10a-204ENSMUST00000214408 5877 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Smc1aQ9CU62 Nf2-202ENSMUST00000056290 2394 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Smc1aQ9CU62 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Smc1aQ9CU62 Capn8-201ENSMUST00000048941 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Smc1aQ9CU62 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Gm14892-201ENSMUST00000117636 267 ntBASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Gm11960-201ENSMUST00000122068 925 ntBASIC12.27□□□□□ -0.45
Smc1aQ9CU62 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Gm5805-201ENSMUST00000072779 456 ntBASIC12.27□□□□□ -0.45
Smc1aQ9CU62 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Gm25201-201ENSMUST00000083093 170 ntBASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Apbb1-217ENSMUST00000191011 2712 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Smc1aQ9CU62 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 67.4 ms