Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm36211-201ENSMUST00000198171 1497 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sox1P53783 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sox1P53783 4930566F21Rik-201ENSMUST00000201177 1535 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Sox1P53783 Zfp14-201ENSMUST00000077787 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Sox1P53783 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Sox1P53783 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Sox1P53783 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC11.24□□□□□ -0.61
Sox1P53783 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Gm43152-201ENSMUST00000202495 1638 ntBASIC11.24□□□□□ -0.61
Sox1P53783 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Sox1P53783 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Sox1P53783 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC11.24□□□□□ -0.61
Sox1P53783 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Gm3404-201ENSMUST00000110596 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Crisp4-203ENSMUST00000115344 960 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 4930594O21Rik-201ENSMUST00000129750 629 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Olfr527-201ENSMUST00000172230 978 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Sox1P53783 Gm9117-201ENSMUST00000177735 1098 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Sox1P53783 Gm18443-201ENSMUST00000185358 556 ntBASIC11.24□□□□□ -0.61
Sox1P53783 Gm28745-201ENSMUST00000190069 305 ntBASIC11.24□□□□□ -0.61
Sox1P53783 Ints5-203ENSMUST00000191089 568 ntTSL 5 BASIC11.24□□□□□ -0.61
Sox1P53783 9530097N15Rik-201ENSMUST00000197819 1068 ntBASIC11.24□□□□□ -0.61
Sox1P53783 Fgfbp1-203ENSMUST00000199894 1228 ntAPPRIS P1 TSL 3 BASIC11.24□□□□□ -0.61
Sox1P53783 CR974487.1-201ENSMUST00000220984 413 ntBASIC11.24□□□□□ -0.61
Sox1P53783 AC102569.1-204ENSMUST00000222816 793 ntTSL 3 BASIC11.24□□□□□ -0.61
Sox1P53783 Phf5a-201ENSMUST00000023117 864 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Cxcr1-201ENSMUST00000053389 1125 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC11.24□□□□□ -0.61
Sox1P53783 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC11.24□□□□□ -0.61
Sox1P53783 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 C130083M11Rik-201ENSMUST00000197171 2072 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Sox1P53783 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Sox1P53783 Prdx3-201ENSMUST00000025961 1478 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Matn2-203ENSMUST00000226766 3252 ntBASIC11.24□□□□□ -0.61
Sox1P53783 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC11.24□□□□□ -0.61
Sox1P53783 Bpifb1-202ENSMUST00000081816 1699 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Sox1P53783 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Sox1P53783 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Zwilch-209ENSMUST00000176299 1831 ntTSL 5 BASIC11.23□□□□□ -0.61
Sox1P53783 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC11.23□□□□□ -0.61
Sox1P53783 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC11.23□□□□□ -0.61
Sox1P53783 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Sox1P53783 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Gm8661-201ENSMUST00000118688 992 ntBASIC11.23□□□□□ -0.61
Sox1P53783 Gm12796-201ENSMUST00000131864 344 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 4933439K11Rik-202ENSMUST00000140307 941 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Gm12207-201ENSMUST00000143016 494 ntTSL 2 BASIC11.23□□□□□ -0.61
Sox1P53783 2010204K13Rik-203ENSMUST00000150671 885 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Stamos-201ENSMUST00000152524 801 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Gm26021-201ENSMUST00000158664 131 ntBASIC11.23□□□□□ -0.61
Sox1P53783 1700028K03Rik-202ENSMUST00000159902 742 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Sox1P53783 H2-Pb-201ENSMUST00000172731 531 ntBASIC11.23□□□□□ -0.61
Sox1P53783 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Sox1P53783 Gm26931-201ENSMUST00000182273 609 ntBASIC11.23□□□□□ -0.61
Sox1P53783 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC11.23□□□□□ -0.61
Sox1P53783 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC11.23□□□□□ -0.61
Sox1P53783 Ighv1-11-201ENSMUST00000191801 351 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Sox1P53783 Gm38038-201ENSMUST00000193803 259 ntBASIC11.23□□□□□ -0.61
Sox1P53783 Gm7812-201ENSMUST00000203479 874 ntBASIC11.23□□□□□ -0.61
Sox1P53783 Gm3198-201ENSMUST00000208725 1026 ntBASIC11.23□□□□□ -0.61
Sox1P53783 E230034D01Rik-203ENSMUST00000217357 1159 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 AC116589.8-201ENSMUST00000220945 364 ntTSL 2 BASIC11.23□□□□□ -0.61
Sox1P53783 Gm18065-201ENSMUST00000221395 526 ntBASIC11.23□□□□□ -0.61
Sox1P53783 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 BC048562-201ENSMUST00000057265 690 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Sox1P53783 Vps25-201ENSMUST00000007533 615 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 57 ms