Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Cux1P53564 Slc38a3-209ENSMUST00000193932 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Cux1P53564 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC16.57■□□□□ 0.24
Cux1P53564 Ighv1-49-201ENSMUST00000103519 294 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Cux1P53564 Gm24161-201ENSMUST00000104592 130 ntBASIC16.57■□□□□ 0.24
Cux1P53564 Gm23432-201ENSMUST00000157181 131 ntBASIC16.57■□□□□ 0.24
Cux1P53564 Gm26532-201ENSMUST00000180630 690 ntBASIC16.57■□□□□ 0.24
Cux1P53564 Mir7088-201ENSMUST00000184227 86 ntBASIC16.57■□□□□ 0.24
Cux1P53564 Gm4866-201ENSMUST00000197408 589 ntBASIC16.57■□□□□ 0.24
Cux1P53564 Gm10581-201ENSMUST00000097986 231 ntBASIC16.57■□□□□ 0.24
Cux1P53564 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Gm45076-201ENSMUST00000207517 1517 ntTSL 5 BASIC16.57■□□□□ 0.24
Cux1P53564 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
Cux1P53564 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC16.57■□□□□ 0.24
Cux1P53564 Gm12498-201ENSMUST00000138374 2458 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Gm12736-201ENSMUST00000119330 236 ntBASIC16.56■□□□□ 0.24
Cux1P53564 Gm6500-201ENSMUST00000119412 451 ntBASIC16.56■□□□□ 0.24
Cux1P53564 Gm17797-201ENSMUST00000182175 997 ntBASIC16.56■□□□□ 0.24
Cux1P53564 Gm28916-201ENSMUST00000186988 699 ntBASIC16.56■□□□□ 0.24
Cux1P53564 Gm44908-201ENSMUST00000208610 266 ntBASIC16.56■□□□□ 0.24
Cux1P53564 AC122824.1-201ENSMUST00000221705 828 ntTSL 3 BASIC16.56■□□□□ 0.24
Cux1P53564 Rack1-201ENSMUST00000020640 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Ano10-203ENSMUST00000214409 2384 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Gm26658-201ENSMUST00000181067 2500 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Cux1P53564 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Slc25a17-201ENSMUST00000023040 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Cux1P53564 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Gm3372-201ENSMUST00000198806 1792 ntBASIC16.56■□□□□ 0.24
Cux1P53564 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Cux1P53564 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC16.56■□□□□ 0.24
Cux1P53564 Hat1-201ENSMUST00000028408 1576 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC16.55■□□□□ 0.24
Cux1P53564 Capns1-202ENSMUST00000108196 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Gm8864-201ENSMUST00000118653 1010 ntBASIC16.55■□□□□ 0.24
Cux1P53564 Polr1c-203ENSMUST00000124655 829 ntTSL 5 BASIC16.55■□□□□ 0.24
Cux1P53564 Gm2316-201ENSMUST00000190613 921 ntBASIC16.55■□□□□ 0.24
Cux1P53564 Gm35584-201ENSMUST00000191767 641 ntTSL 5 BASIC16.55■□□□□ 0.24
Cux1P53564 Gm37872-201ENSMUST00000192362 886 ntTSL 5 BASIC16.55■□□□□ 0.24
Cux1P53564 Gm31678-201ENSMUST00000198262 454 ntTSL 3 BASIC16.55■□□□□ 0.24
Cux1P53564 Gm40332-201ENSMUST00000199847 938 ntBASIC16.55■□□□□ 0.24
Cux1P53564 Gm6008-201ENSMUST00000206542 874 ntBASIC16.55■□□□□ 0.24
Cux1P53564 AC130217.1-201ENSMUST00000224146 909 ntBASIC16.55■□□□□ 0.24
Cux1P53564 Supt4a-201ENSMUST00000093955 706 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Bco1-203ENSMUST00000176860 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Sez6l-206ENSMUST00000212758 2664 ntTSL 5 BASIC16.55■□□□□ 0.24
Cux1P53564 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Cux1P53564 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Armcx3-203ENSMUST00000086884 3488 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Cux1P53564 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC16.55■□□□□ 0.24
Cux1P53564 Olfr543-202ENSMUST00000219647 1456 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Cux1P53564 Eif2ak4-203ENSMUST00000110869 1715 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Gstm3-201ENSMUST00000004136 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Serpina1e-202ENSMUST00000122229 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 A1bg-201ENSMUST00000096418 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Mylk3-202ENSMUST00000121972 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Gm24066-201ENSMUST00000104515 131 ntBASIC16.55■□□□□ 0.24
Cux1P53564 Ppih-205ENSMUST00000106321 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 S100a16-205ENSMUST00000107334 879 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
Cux1P53564 1810058I24Rik-201ENSMUST00000130875 690 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Fthl17a-201ENSMUST00000048382 835 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cux1P53564 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Sppl2c-201ENSMUST00000059448 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Phc1-211ENSMUST00000161054 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cux1P53564 Slc25a21-202ENSMUST00000110680 918 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms