Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm3945-201ENSMUST00000196637 683 ntBASIC12.69□□□□□ -0.38
Col1a1P11087 Gm43821-201ENSMUST00000199198 729 ntTSL 3 BASIC12.69□□□□□ -0.38
Col1a1P11087 Gm6008-201ENSMUST00000206542 874 ntBASIC12.69□□□□□ -0.38
Col1a1P11087 Gm40689-201ENSMUST00000218006 362 ntTSL 5 BASIC12.69□□□□□ -0.38
Col1a1P11087 Gm12248-203ENSMUST00000219877 1160 ntAPPRIS P5 TSL 5 BASIC12.69□□□□□ -0.38
Col1a1P11087 Speer2-201ENSMUST00000076500 1118 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
Col1a1P11087 P2rx1-202ENSMUST00000092938 1119 ntTSL 5 BASIC12.69□□□□□ -0.38
Col1a1P11087 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC12.69□□□□□ -0.38
Col1a1P11087 Hnrnph2-203ENSMUST00000074950 2426 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC12.69□□□□□ -0.38
Col1a1P11087 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Col1a1P11087 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Katnal2-208ENSMUST00000137498 1824 ntTSL 5 BASIC12.69□□□□□ -0.38
Col1a1P11087 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC12.69□□□□□ -0.38
Col1a1P11087 Gm7701-201ENSMUST00000163185 1479 ntBASIC12.69□□□□□ -0.38
Col1a1P11087 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Col1a1P11087 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col1a1P11087 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.68□□□□□ -0.38
Col1a1P11087 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Col1a1P11087 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Capns1-202ENSMUST00000108196 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Gm3404-201ENSMUST00000110596 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Rab29-202ENSMUST00000112386 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 1810058I24Rik-201ENSMUST00000130875 690 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Platr12-201ENSMUST00000141027 462 ntTSL 3 BASIC12.68□□□□□ -0.38
Col1a1P11087 Pik3r4-206ENSMUST00000188784 1295 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Gm34248-201ENSMUST00000200027 474 ntBASIC12.68□□□□□ -0.38
Col1a1P11087 Gm42375-201ENSMUST00000206226 745 ntTSL 5 BASIC12.68□□□□□ -0.38
Col1a1P11087 1700018G05Rik-201ENSMUST00000211116 386 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Gm1000-202ENSMUST00000222329 757 ntTSL 5 BASIC12.68□□□□□ -0.38
Col1a1P11087 AC102327.1-201ENSMUST00000226389 742 ntBASIC12.68□□□□□ -0.38
Col1a1P11087 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Gm5148-202ENSMUST00000099128 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC12.68□□□□□ -0.38
Col1a1P11087 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC12.68□□□□□ -0.38
Col1a1P11087 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Ccr6-202ENSMUST00000164411 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 4930517G19Rik-201ENSMUST00000206152 1676 ntBASIC12.68□□□□□ -0.38
Col1a1P11087 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC12.68□□□□□ -0.38
Col1a1P11087 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.68□□□□□ -0.38
Col1a1P11087 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Col1a1P11087 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Eddm3b-201ENSMUST00000100645 1412 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Gm6783-201ENSMUST00000120916 1437 ntBASIC12.68□□□□□ -0.38
Col1a1P11087 Gm5174-201ENSMUST00000171131 1423 ntBASIC12.68□□□□□ -0.38
Col1a1P11087 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Col1a1P11087 Gm42521-201ENSMUST00000199190 2040 ntBASIC12.68□□□□□ -0.38
Col1a1P11087 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col1a1P11087 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Fanca-202ENSMUST00000118395 3274 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Xaf1-204ENSMUST00000146233 2597 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Col1a1P11087 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Gm12530-201ENSMUST00000152074 1759 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Gm46355-201ENSMUST00000221434 1671 ntTSL 5 BASIC12.67□□□□□ -0.38
Col1a1P11087 Iyd-201ENSMUST00000019896 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Gm42849-201ENSMUST00000202834 1584 ntTSL 5 BASIC12.67□□□□□ -0.38
Col1a1P11087 Gm8864-201ENSMUST00000118653 1010 ntBASIC12.67□□□□□ -0.38
Col1a1P11087 D430040D24Rik-201ENSMUST00000149224 910 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Mir7088-201ENSMUST00000184227 86 ntBASIC12.67□□□□□ -0.38
Col1a1P11087 Gm28916-201ENSMUST00000186988 699 ntBASIC12.67□□□□□ -0.38
Col1a1P11087 4930478P22Rik-202ENSMUST00000201921 723 ntTSL 3 BASIC12.67□□□□□ -0.38
Col1a1P11087 2010008C14Rik-201ENSMUST00000203956 593 ntBASIC12.67□□□□□ -0.38
Col1a1P11087 Zfp787-203ENSMUST00000207331 376 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Gm6426-201ENSMUST00000209048 854 ntBASIC12.67□□□□□ -0.38
Col1a1P11087 Gm29328-212ENSMUST00000209182 1168 ntTSL 5 BASIC12.67□□□□□ -0.38
Col1a1P11087 Tpd52l1-204ENSMUST00000214644 1103 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 AC123061.1-201ENSMUST00000228021 999 ntBASIC12.67□□□□□ -0.38
Col1a1P11087 Gm25125-201ENSMUST00000083340 136 ntBASIC12.67□□□□□ -0.38
Col1a1P11087 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Gm43622-201ENSMUST00000200140 2019 ntBASIC12.67□□□□□ -0.38
Col1a1P11087 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Col1a1P11087 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 A1cf-204ENSMUST00000224564 1432 ntBASIC12.67□□□□□ -0.38
Col1a1P11087 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col1a1P11087 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 162.3 ms