Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 AC122428.2-201ENSMUST00000216321 1832 ntBASIC22.06■■□□□ 1.12
Prpf40aQ9R1C7 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Prpf40aQ9R1C7 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Prpf40aQ9R1C7 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Prpf40aQ9R1C7 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Prpf40aQ9R1C7 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Prpf40aQ9R1C7 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
Prpf40aQ9R1C7 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Prpf40aQ9R1C7 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Prpf40aQ9R1C7 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Prpf40aQ9R1C7 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Prpf40aQ9R1C7 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
Prpf40aQ9R1C7 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Prpf40aQ9R1C7 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
Prpf40aQ9R1C7 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Prpf40aQ9R1C7 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Prpf40aQ9R1C7 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
Prpf40aQ9R1C7 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Prpf40aQ9R1C7 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC22.02■■□□□ 1.12
Prpf40aQ9R1C7 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Prpf40aQ9R1C7 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Prpf40aQ9R1C7 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Prpf40aQ9R1C7 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
Prpf40aQ9R1C7 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Prpf40aQ9R1C7 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC22.01■■□□□ 1.11
Prpf40aQ9R1C7 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Prpf40aQ9R1C7 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Prpf40aQ9R1C7 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Prpf40aQ9R1C7 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Prpf40aQ9R1C7 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC22■■□□□ 1.11
Prpf40aQ9R1C7 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
Prpf40aQ9R1C7 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC22■■□□□ 1.11
Prpf40aQ9R1C7 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
Prpf40aQ9R1C7 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC22■■□□□ 1.11
Prpf40aQ9R1C7 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC22■■□□□ 1.11
Prpf40aQ9R1C7 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Prpf40aQ9R1C7 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Prpf40aQ9R1C7 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Prpf40aQ9R1C7 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Prpf40aQ9R1C7 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Prpf40aQ9R1C7 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Prpf40aQ9R1C7 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Prpf40aQ9R1C7 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.99■■□□□ 1.11
Prpf40aQ9R1C7 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC21.99■■□□□ 1.11
Prpf40aQ9R1C7 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Prpf40aQ9R1C7 AC152827.1-201ENSMUST00000221143 2189 ntBASIC21.99■■□□□ 1.11
Prpf40aQ9R1C7 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Prpf40aQ9R1C7 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Prpf40aQ9R1C7 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Prpf40aQ9R1C7 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Prpf40aQ9R1C7 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
Prpf40aQ9R1C7 Gm12922-201ENSMUST00000120626 809 ntBASIC21.98■■□□□ 1.11
Prpf40aQ9R1C7 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
Prpf40aQ9R1C7 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Prpf40aQ9R1C7 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Prpf40aQ9R1C7 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Prpf40aQ9R1C7 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Prpf40aQ9R1C7 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
Prpf40aQ9R1C7 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Prpf40aQ9R1C7 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Prpf40aQ9R1C7 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Prpf40aQ9R1C7 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Prpf40aQ9R1C7 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Prpf40aQ9R1C7 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Prpf40aQ9R1C7 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Prpf40aQ9R1C7 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Prpf40aQ9R1C7 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.96■■□□□ 1.11
Prpf40aQ9R1C7 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Prpf40aQ9R1C7 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Prpf40aQ9R1C7 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Prpf40aQ9R1C7 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Prpf40aQ9R1C7 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.96■■□□□ 1.11
Prpf40aQ9R1C7 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Prpf40aQ9R1C7 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Prpf40aQ9R1C7 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms