Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC21.21■□□□□ 0.99
Ccdc28aQ8CEI3 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc28aQ8CEI3 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc28aQ8CEI3 Gm16464-201ENSMUST00000117815 1095 ntBASIC21.21■□□□□ 0.99
Ccdc28aQ8CEI3 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Ccdc28aQ8CEI3 Nsd1-203ENSMUST00000224156 1149 ntBASIC21.21■□□□□ 0.99
Ccdc28aQ8CEI3 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc28aQ8CEI3 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc28aQ8CEI3 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc28aQ8CEI3 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc28aQ8CEI3 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28aQ8CEI3 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28aQ8CEI3 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28aQ8CEI3 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28aQ8CEI3 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Ccdc28aQ8CEI3 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28aQ8CEI3 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28aQ8CEI3 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Ccdc28aQ8CEI3 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28aQ8CEI3 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28aQ8CEI3 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Ccdc28aQ8CEI3 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Ccdc28aQ8CEI3 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.19■□□□□ 0.98
Ccdc28aQ8CEI3 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc28aQ8CEI3 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Ccdc28aQ8CEI3 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc28aQ8CEI3 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc28aQ8CEI3 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc28aQ8CEI3 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc28aQ8CEI3 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC21.19■□□□□ 0.98
Ccdc28aQ8CEI3 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC21.19■□□□□ 0.98
Ccdc28aQ8CEI3 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc28aQ8CEI3 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28aQ8CEI3 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28aQ8CEI3 Gm45444-201ENSMUST00000211394 898 ntBASIC21.18■□□□□ 0.98
Ccdc28aQ8CEI3 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28aQ8CEI3 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28aQ8CEI3 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28aQ8CEI3 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28aQ8CEI3 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28aQ8CEI3 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28aQ8CEI3 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28aQ8CEI3 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc28aQ8CEI3 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc28aQ8CEI3 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc28aQ8CEI3 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc28aQ8CEI3 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc28aQ8CEI3 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc28aQ8CEI3 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Ccdc28aQ8CEI3 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc28aQ8CEI3 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc28aQ8CEI3 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc28aQ8CEI3 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc28aQ8CEI3 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc28aQ8CEI3 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc28aQ8CEI3 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc28aQ8CEI3 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc28aQ8CEI3 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC21.16■□□□□ 0.98
Ccdc28aQ8CEI3 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc28aQ8CEI3 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Ccdc28aQ8CEI3 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc28aQ8CEI3 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc28aQ8CEI3 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Ccdc28aQ8CEI3 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC21.15■□□□□ 0.98
Ccdc28aQ8CEI3 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc28aQ8CEI3 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.14■□□□□ 0.98
Ccdc28aQ8CEI3 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ccdc28aQ8CEI3 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ccdc28aQ8CEI3 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
Ccdc28aQ8CEI3 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Ccdc28aQ8CEI3 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC21.14■□□□□ 0.97
Ccdc28aQ8CEI3 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC21.14■□□□□ 0.97
Ccdc28aQ8CEI3 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC21.14■□□□□ 0.97
Ccdc28aQ8CEI3 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc28aQ8CEI3 Gm43545-201ENSMUST00000196765 2779 ntBASIC21.14■□□□□ 0.97
Ccdc28aQ8CEI3 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc28aQ8CEI3 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc28aQ8CEI3 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Ccdc28aQ8CEI3 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Ccdc28aQ8CEI3 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc28aQ8CEI3 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc28aQ8CEI3 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc28aQ8CEI3 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc28aQ8CEI3 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccdc28aQ8CEI3 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ccdc28aQ8CEI3 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ccdc28aQ8CEI3 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ccdc28aQ8CEI3 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms