Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Trim9Q8C7M3 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC22.3■■□□□ 1.16
Trim9Q8C7M3 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim9Q8C7M3 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim9Q8C7M3 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC22.29■■□□□ 1.16
Trim9Q8C7M3 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim9Q8C7M3 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC22.29■■□□□ 1.16
Trim9Q8C7M3 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim9Q8C7M3 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim9Q8C7M3 Krt8-ps-201ENSMUST00000208495 945 ntBASIC22.28■■□□□ 1.16
Trim9Q8C7M3 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim9Q8C7M3 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim9Q8C7M3 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim9Q8C7M3 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim9Q8C7M3 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim9Q8C7M3 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim9Q8C7M3 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim9Q8C7M3 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim9Q8C7M3 Gm20634-201ENSMUST00000090779 2956 ntBASIC22.27■■□□□ 1.16
Trim9Q8C7M3 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
Trim9Q8C7M3 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC22.27■■□□□ 1.16
Trim9Q8C7M3 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim9Q8C7M3 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim9Q8C7M3 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim9Q8C7M3 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim9Q8C7M3 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
Trim9Q8C7M3 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim9Q8C7M3 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim9Q8C7M3 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim9Q8C7M3 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC22.26■■□□□ 1.15
Trim9Q8C7M3 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC22.26■■□□□ 1.15
Trim9Q8C7M3 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim9Q8C7M3 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim9Q8C7M3 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim9Q8C7M3 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim9Q8C7M3 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC22.25■■□□□ 1.15
Trim9Q8C7M3 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Trim9Q8C7M3 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim9Q8C7M3 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim9Q8C7M3 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
Trim9Q8C7M3 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim9Q8C7M3 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim9Q8C7M3 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim9Q8C7M3 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC22.25■■□□□ 1.15
Trim9Q8C7M3 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim9Q8C7M3 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim9Q8C7M3 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim9Q8C7M3 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Trim9Q8C7M3 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC22.24■■□□□ 1.15
Trim9Q8C7M3 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
Trim9Q8C7M3 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Trim9Q8C7M3 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
Trim9Q8C7M3 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim9Q8C7M3 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
Trim9Q8C7M3 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC22.23■■□□□ 1.15
Trim9Q8C7M3 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
Trim9Q8C7M3 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim9Q8C7M3 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim9Q8C7M3 Gm34220-201ENSMUST00000223001 2709 ntBASIC22.23■■□□□ 1.15
Trim9Q8C7M3 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim9Q8C7M3 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim9Q8C7M3 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim9Q8C7M3 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim9Q8C7M3 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim9Q8C7M3 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Trim9Q8C7M3 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim9Q8C7M3 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim9Q8C7M3 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
Trim9Q8C7M3 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC22.21■■□□□ 1.15
Trim9Q8C7M3 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Trim9Q8C7M3 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim9Q8C7M3 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Trim9Q8C7M3 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Trim9Q8C7M3 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trim9Q8C7M3 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trim9Q8C7M3 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Trim9Q8C7M3 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC22.2■■□□□ 1.14
Trim9Q8C7M3 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trim9Q8C7M3 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trim9Q8C7M3 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Trim9Q8C7M3 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trim9Q8C7M3 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Trim9Q8C7M3 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Trim9Q8C7M3 Mir6236-201ENSMUST00000184437 123 ntBASIC22.19■■□□□ 1.14
Trim9Q8C7M3 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC22.19■■□□□ 1.14
Trim9Q8C7M3 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Trim9Q8C7M3 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms