Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ubfd1Q78JW9 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ubfd1Q78JW9 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ubfd1Q78JW9 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ubfd1Q78JW9 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ubfd1Q78JW9 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Ubfd1Q78JW9 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ubfd1Q78JW9 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ubfd1Q78JW9 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ubfd1Q78JW9 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Ubfd1Q78JW9 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ubfd1Q78JW9 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubfd1Q78JW9 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ubfd1Q78JW9 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ubfd1Q78JW9 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.62■□□□□ 0.73
Ubfd1Q78JW9 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ubfd1Q78JW9 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
Ubfd1Q78JW9 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
Ubfd1Q78JW9 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ubfd1Q78JW9 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ubfd1Q78JW9 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ubfd1Q78JW9 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Ubfd1Q78JW9 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ubfd1Q78JW9 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ubfd1Q78JW9 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ubfd1Q78JW9 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ubfd1Q78JW9 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ubfd1Q78JW9 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ubfd1Q78JW9 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Ubfd1Q78JW9 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ubfd1Q78JW9 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Gm26833-201ENSMUST00000180899 440 ntBASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubfd1Q78JW9 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Ubfd1Q78JW9 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19.59■□□□□ 0.73
Ubfd1Q78JW9 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubfd1Q78JW9 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubfd1Q78JW9 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ubfd1Q78JW9 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubfd1Q78JW9 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubfd1Q78JW9 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ubfd1Q78JW9 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC19.58■□□□□ 0.73
Ubfd1Q78JW9 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ubfd1Q78JW9 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19.58■□□□□ 0.73
Ubfd1Q78JW9 Cdc34b-202ENSMUST00000188741 1252 ntBASIC19.58■□□□□ 0.72
Ubfd1Q78JW9 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC19.58■□□□□ 0.72
Ubfd1Q78JW9 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ubfd1Q78JW9 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Ubfd1Q78JW9 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ubfd1Q78JW9 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ubfd1Q78JW9 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC19.58■□□□□ 0.72
Ubfd1Q78JW9 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ubfd1Q78JW9 Dmtn-209ENSMUST00000228295 2572 ntBASIC19.58■□□□□ 0.72
Ubfd1Q78JW9 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ubfd1Q78JW9 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ubfd1Q78JW9 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ubfd1Q78JW9 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ubfd1Q78JW9 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Ubfd1Q78JW9 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Ubfd1Q78JW9 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ubfd1Q78JW9 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ubfd1Q78JW9 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ubfd1Q78JW9 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ubfd1Q78JW9 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ubfd1Q78JW9 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.55■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms