Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 Gm13241-201ENSMUST00000094493 780 ntBASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Upf3bQ3ULL6 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Upf3bQ3ULL6 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Upf3bQ3ULL6 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Upf3bQ3ULL6 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Upf3bQ3ULL6 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Upf3bQ3ULL6 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.04
Upf3bQ3ULL6 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Upf3bQ3ULL6 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
Upf3bQ3ULL6 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Upf3bQ3ULL6 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Upf3bQ3ULL6 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Upf3bQ3ULL6 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Upf3bQ3ULL6 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Upf3bQ3ULL6 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Upf3bQ3ULL6 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Upf3bQ3ULL6 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Upf3bQ3ULL6 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Upf3bQ3ULL6 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC21.51■■□□□ 1.03
Upf3bQ3ULL6 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Upf3bQ3ULL6 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Upf3bQ3ULL6 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Upf3bQ3ULL6 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
Upf3bQ3ULL6 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Upf3bQ3ULL6 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Upf3bQ3ULL6 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC21.5■■□□□ 1.03
Upf3bQ3ULL6 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC21.5■■□□□ 1.03
Upf3bQ3ULL6 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Upf3bQ3ULL6 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Upf3bQ3ULL6 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Upf3bQ3ULL6 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf3bQ3ULL6 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf3bQ3ULL6 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC21.49■■□□□ 1.03
Upf3bQ3ULL6 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf3bQ3ULL6 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf3bQ3ULL6 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf3bQ3ULL6 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf3bQ3ULL6 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf3bQ3ULL6 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Upf3bQ3ULL6 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Upf3bQ3ULL6 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Upf3bQ3ULL6 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Upf3bQ3ULL6 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Upf3bQ3ULL6 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.48■■□□□ 1.03
Upf3bQ3ULL6 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC21.48■■□□□ 1.03
Upf3bQ3ULL6 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Gm9207-201ENSMUST00000198773 1115 ntBASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Gm43034-201ENSMUST00000198678 1364 ntBASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Upf3bQ3ULL6 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Upf3bQ3ULL6 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Upf3bQ3ULL6 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Upf3bQ3ULL6 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Upf3bQ3ULL6 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Upf3bQ3ULL6 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Upf3bQ3ULL6 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Upf3bQ3ULL6 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Upf3bQ3ULL6 Gm21956-201ENSMUST00000179946 522 ntBASIC21.45■■□□□ 1.02
Upf3bQ3ULL6 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.45■■□□□ 1.02
Upf3bQ3ULL6 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Upf3bQ3ULL6 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 AC140930.3-201ENSMUST00000222935 274 ntBASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3bQ3ULL6 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms