Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Upf3aQ3ULJ3 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC21.32■■□□□ 1
Upf3aQ3ULJ3 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Upf3aQ3ULJ3 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Upf3aQ3ULJ3 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Upf3aQ3ULJ3 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.32■■□□□ 1
Upf3aQ3ULJ3 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Upf3aQ3ULJ3 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.32■■□□□ 1
Upf3aQ3ULJ3 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Upf3aQ3ULJ3 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC21.32■■□□□ 1
Upf3aQ3ULJ3 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Upf3aQ3ULJ3 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf3aQ3ULJ3 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC21.31■■□□□ 1
Upf3aQ3ULJ3 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf3aQ3ULJ3 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf3aQ3ULJ3 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf3aQ3ULJ3 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf3aQ3ULJ3 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Upf3aQ3ULJ3 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf3aQ3ULJ3 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf3aQ3ULJ3 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Upf3aQ3ULJ3 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Upf3aQ3ULJ3 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC21.3■■□□□ 1
Upf3aQ3ULJ3 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Upf3aQ3ULJ3 AV356131-201ENSMUST00000206201 750 ntBASIC21.3■■□□□ 1
Upf3aQ3ULJ3 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Upf3aQ3ULJ3 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC21.3■■□□□ 1
Upf3aQ3ULJ3 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
Upf3aQ3ULJ3 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3aQ3ULJ3 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC21.29■■□□□ 1
Upf3aQ3ULJ3 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3aQ3ULJ3 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3aQ3ULJ3 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3aQ3ULJ3 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3aQ3ULJ3 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC21.29■■□□□ 1
Upf3aQ3ULJ3 Mir6236-201ENSMUST00000184437 123 ntBASIC21.29■■□□□ 1
Upf3aQ3ULJ3 Spcs1-207ENSMUST00000228767 1008 ntBASIC21.29■■□□□ 1
Upf3aQ3ULJ3 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3aQ3ULJ3 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3aQ3ULJ3 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.29■■□□□ 1
Upf3aQ3ULJ3 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC21.29■■□□□ 1
Upf3aQ3ULJ3 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC21.29■■□□□ 1
Upf3aQ3ULJ3 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.28■■□□□ 1
Upf3aQ3ULJ3 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Upf3aQ3ULJ3 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
Upf3aQ3ULJ3 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC21.28■■□□□ 1
Upf3aQ3ULJ3 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Upf3aQ3ULJ3 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Upf3aQ3ULJ3 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Upf3aQ3ULJ3 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Upf3aQ3ULJ3 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Upf3aQ3ULJ3 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Upf3aQ3ULJ3 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Upf3aQ3ULJ3 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Upf3aQ3ULJ3 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.27■■□□□ 1
Upf3aQ3ULJ3 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3aQ3ULJ3 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3aQ3ULJ3 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC21.26■□□□□ 0.99
Upf3aQ3ULJ3 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3aQ3ULJ3 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3aQ3ULJ3 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf3aQ3ULJ3 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Upf3aQ3ULJ3 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Upf3aQ3ULJ3 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.25■□□□□ 0.99
Upf3aQ3ULJ3 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Upf3aQ3ULJ3 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.25■□□□□ 0.99
Upf3aQ3ULJ3 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf3aQ3ULJ3 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Upf3aQ3ULJ3 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Upf3aQ3ULJ3 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Upf3aQ3ULJ3 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Upf3aQ3ULJ3 Gm42778-201ENSMUST00000199644 553 ntBASIC21.24■□□□□ 0.99
Upf3aQ3ULJ3 AC137127.1-201ENSMUST00000213466 1078 ntBASIC21.24■□□□□ 0.99
Upf3aQ3ULJ3 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Upf3aQ3ULJ3 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Upf3aQ3ULJ3 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
Upf3aQ3ULJ3 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Upf3aQ3ULJ3 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Upf3aQ3ULJ3 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf3aQ3ULJ3 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.23■□□□□ 0.99
Upf3aQ3ULJ3 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Upf3aQ3ULJ3 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.23■□□□□ 0.99
Upf3aQ3ULJ3 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf3aQ3ULJ3 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf3aQ3ULJ3 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf3aQ3ULJ3 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3aQ3ULJ3 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3aQ3ULJ3 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3aQ3ULJ3 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC21.22■□□□□ 0.99
Upf3aQ3ULJ3 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3aQ3ULJ3 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3aQ3ULJ3 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3aQ3ULJ3 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3aQ3ULJ3 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Upf3aQ3ULJ3 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC21.21■□□□□ 0.99
Upf3aQ3ULJ3 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3aQ3ULJ3 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC21.21■□□□□ 0.99
Upf3aQ3ULJ3 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21.21■□□□□ 0.99
Upf3aQ3ULJ3 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC21.21■□□□□ 0.99
Upf3aQ3ULJ3 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC21.21■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms