Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC25.99■■□□□ 1.75
Ddb1Q3U1J4 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
Ddb1Q3U1J4 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Ddb1Q3U1J4 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Ddb1Q3U1J4 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
Ddb1Q3U1J4 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Ddb1Q3U1J4 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC25.98■■□□□ 1.75
Ddb1Q3U1J4 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Ddb1Q3U1J4 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Ddb1Q3U1J4 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Ddb1Q3U1J4 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC25.97■■□□□ 1.75
Ddb1Q3U1J4 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Ddb1Q3U1J4 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
Ddb1Q3U1J4 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC25.96■■□□□ 1.75
Ddb1Q3U1J4 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC25.96■■□□□ 1.75
Ddb1Q3U1J4 Mir5133-201ENSMUST00000174955 77 ntBASIC25.96■■□□□ 1.75
Ddb1Q3U1J4 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC25.96■■□□□ 1.75
Ddb1Q3U1J4 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Ddb1Q3U1J4 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
Ddb1Q3U1J4 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
Ddb1Q3U1J4 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
Ddb1Q3U1J4 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
Ddb1Q3U1J4 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
Ddb1Q3U1J4 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
Ddb1Q3U1J4 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Ddb1Q3U1J4 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Ddb1Q3U1J4 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Ddb1Q3U1J4 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
Ddb1Q3U1J4 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC25.94■■□□□ 1.74
Ddb1Q3U1J4 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Ddb1Q3U1J4 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Ddb1Q3U1J4 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
Ddb1Q3U1J4 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC25.93■■□□□ 1.74
Ddb1Q3U1J4 Gm4968-201ENSMUST00000071458 858 ntBASIC25.93■■□□□ 1.74
Ddb1Q3U1J4 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Ddb1Q3U1J4 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Ddb1Q3U1J4 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC25.93■■□□□ 1.74
Ddb1Q3U1J4 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Ddb1Q3U1J4 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Ddb1Q3U1J4 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
Ddb1Q3U1J4 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
Ddb1Q3U1J4 Gm22240-201ENSMUST00000175225 82 ntBASIC25.92■■□□□ 1.74
Ddb1Q3U1J4 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
Ddb1Q3U1J4 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
Ddb1Q3U1J4 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Ddb1Q3U1J4 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
Ddb1Q3U1J4 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Ddb1Q3U1J4 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Ddb1Q3U1J4 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC25.91■■□□□ 1.74
Ddb1Q3U1J4 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Ddb1Q3U1J4 Gm27801-201ENSMUST00000184174 223 ntBASIC25.91■■□□□ 1.74
Ddb1Q3U1J4 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Ddb1Q3U1J4 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Gm42555-201ENSMUST00000199304 1039 ntBASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Gm42418-201ENSMUST00000182010 1831 ntBASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ddb1Q3U1J4 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Ddb1Q3U1J4 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
Ddb1Q3U1J4 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC25.89■■□□□ 1.74
Ddb1Q3U1J4 Gm20760-201ENSMUST00000179197 648 ntBASIC25.89■■□□□ 1.74
Ddb1Q3U1J4 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Ddb1Q3U1J4 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
Ddb1Q3U1J4 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
Ddb1Q3U1J4 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Ddb1Q3U1J4 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
Ddb1Q3U1J4 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Ddb1Q3U1J4 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Ddb1Q3U1J4 Gm10252-201ENSMUST00000209541 832 ntBASIC25.88■■□□□ 1.73
Ddb1Q3U1J4 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Ddb1Q3U1J4 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Ddb1Q3U1J4 H3f3aos-201ENSMUST00000097448 2905 ntBASIC25.87■■□□□ 1.73
Ddb1Q3U1J4 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Ddb1Q3U1J4 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Ddb1Q3U1J4 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
Ddb1Q3U1J4 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC25.86■■□□□ 1.73
Ddb1Q3U1J4 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Ddb1Q3U1J4 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
Ddb1Q3U1J4 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Ddb1Q3U1J4 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Ddb1Q3U1J4 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC25.85■■□□□ 1.73
Ddb1Q3U1J4 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC25.85■■□□□ 1.73
Ddb1Q3U1J4 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Ddb1Q3U1J4 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Ddb1Q3U1J4 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
Ddb1Q3U1J4 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC25.84■■□□□ 1.73
Ddb1Q3U1J4 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC25.84■■□□□ 1.73
Ddb1Q3U1J4 Mir6236-201ENSMUST00000184437 123 ntBASIC25.84■■□□□ 1.73
Ddb1Q3U1J4 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Ddb1Q3U1J4 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Ddb1Q3U1J4 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms