Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ptchd3Q0EEE2 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ptchd3Q0EEE2 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ptchd3Q0EEE2 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ptchd3Q0EEE2 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ptchd3Q0EEE2 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ptchd3Q0EEE2 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.36■□□□□ 0.69
Ptchd3Q0EEE2 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ptchd3Q0EEE2 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
Ptchd3Q0EEE2 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ptchd3Q0EEE2 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ptchd3Q0EEE2 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ptchd3Q0EEE2 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ptchd3Q0EEE2 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ptchd3Q0EEE2 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.35■□□□□ 0.69
Ptchd3Q0EEE2 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ptchd3Q0EEE2 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Ptchd3Q0EEE2 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ptchd3Q0EEE2 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.35■□□□□ 0.69
Ptchd3Q0EEE2 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ptchd3Q0EEE2 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.35■□□□□ 0.69
Ptchd3Q0EEE2 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ptchd3Q0EEE2 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ptchd3Q0EEE2 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ptchd3Q0EEE2 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ptchd3Q0EEE2 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ptchd3Q0EEE2 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.34■□□□□ 0.69
Ptchd3Q0EEE2 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ptchd3Q0EEE2 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ptchd3Q0EEE2 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ptchd3Q0EEE2 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ptchd3Q0EEE2 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ptchd3Q0EEE2 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ptchd3Q0EEE2 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Ptchd3Q0EEE2 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ptchd3Q0EEE2 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ptchd3Q0EEE2 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.33■□□□□ 0.69
Ptchd3Q0EEE2 Gm43566-201ENSMUST00000196851 808 ntBASIC19.33■□□□□ 0.68
Ptchd3Q0EEE2 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ptchd3Q0EEE2 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ptchd3Q0EEE2 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ptchd3Q0EEE2 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC19.33■□□□□ 0.68
Ptchd3Q0EEE2 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.33■□□□□ 0.68
Ptchd3Q0EEE2 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ptchd3Q0EEE2 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ptchd3Q0EEE2 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.32■□□□□ 0.68
Ptchd3Q0EEE2 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ptchd3Q0EEE2 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.32■□□□□ 0.68
Ptchd3Q0EEE2 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ptchd3Q0EEE2 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ptchd3Q0EEE2 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.32■□□□□ 0.68
Ptchd3Q0EEE2 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ptchd3Q0EEE2 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ptchd3Q0EEE2 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
Ptchd3Q0EEE2 Hsf1-204ENSMUST00000226872 2104 ntBASIC19.31■□□□□ 0.68
Ptchd3Q0EEE2 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ptchd3Q0EEE2 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ptchd3Q0EEE2 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ptchd3Q0EEE2 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.31■□□□□ 0.68
Ptchd3Q0EEE2 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Ptchd3Q0EEE2 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ptchd3Q0EEE2 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ptchd3Q0EEE2 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ptchd3Q0EEE2 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ptchd3Q0EEE2 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Ptchd3Q0EEE2 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Ptchd3Q0EEE2 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Ptchd3Q0EEE2 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ptchd3Q0EEE2 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ptchd3Q0EEE2 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ptchd3Q0EEE2 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ptchd3Q0EEE2 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ptchd3Q0EEE2 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ptchd3Q0EEE2 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ptchd3Q0EEE2 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ptchd3Q0EEE2 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ptchd3Q0EEE2 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ptchd3Q0EEE2 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ptchd3Q0EEE2 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ptchd3Q0EEE2 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
Ptchd3Q0EEE2 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ptchd3Q0EEE2 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ptchd3Q0EEE2 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ptchd3Q0EEE2 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms