Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Msx3P70354 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Msx3P70354 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Msx3P70354 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Msx3P70354 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
Msx3P70354 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Msx3P70354 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Msx3P70354 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Msx3P70354 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Msx3P70354 Gm9870-201ENSMUST00000063874 645 ntBASIC20.71■□□□□ 0.91
Msx3P70354 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.71■□□□□ 0.91
Msx3P70354 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.71■□□□□ 0.91
Msx3P70354 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC20.71■□□□□ 0.91
Msx3P70354 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Msx3P70354 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Msx3P70354 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Msx3P70354 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Msx3P70354 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Msx3P70354 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Msx3P70354 Etf1-202ENSMUST00000180351 108 ntBASIC20.7■□□□□ 0.9
Msx3P70354 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Msx3P70354 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Msx3P70354 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
Msx3P70354 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Msx3P70354 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Msx3P70354 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC20.69■□□□□ 0.9
Msx3P70354 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Msx3P70354 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Msx3P70354 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.69■□□□□ 0.9
Msx3P70354 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Msx3P70354 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Msx3P70354 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msx3P70354 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msx3P70354 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msx3P70354 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msx3P70354 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msx3P70354 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msx3P70354 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
Msx3P70354 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Msx3P70354 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.67■□□□□ 0.9
Msx3P70354 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Msx3P70354 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Msx3P70354 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Msx3P70354 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Msx3P70354 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Msx3P70354 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Msx3P70354 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Msx3P70354 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Msx3P70354 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Msx3P70354 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.66■□□□□ 0.9
Msx3P70354 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC20.66■□□□□ 0.9
Msx3P70354 Gm43530-201ENSMUST00000195920 274 ntBASIC20.66■□□□□ 0.9
Msx3P70354 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.66■□□□□ 0.9
Msx3P70354 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Msx3P70354 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
Msx3P70354 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Msx3P70354 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Msx3P70354 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Msx3P70354 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Msx3P70354 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.65■□□□□ 0.9
Msx3P70354 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Msx3P70354 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Msx3P70354 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Msx3P70354 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Msx3P70354 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
Msx3P70354 Gm10657-201ENSMUST00000193528 1031 ntBASIC20.64■□□□□ 0.89
Msx3P70354 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC20.64■□□□□ 0.89
Msx3P70354 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Msx3P70354 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Msx3P70354 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Msx3P70354 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Msx3P70354 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Msx3P70354 Gm9959-201ENSMUST00000068277 390 ntBASIC20.63■□□□□ 0.89
Msx3P70354 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Msx3P70354 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Msx3P70354 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Msx3P70354 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Msx3P70354 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Msx3P70354 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Msx3P70354 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Msx3P70354 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Msx3P70354 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Msx3P70354 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Msx3P70354 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Msx3P70354 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Msx3P70354 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.62■□□□□ 0.89
Msx3P70354 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Msx3P70354 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.62■□□□□ 0.89
Msx3P70354 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC20.62■□□□□ 0.89
Msx3P70354 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC20.62■□□□□ 0.89
Msx3P70354 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Msx3P70354 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Msx3P70354 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Msx3P70354 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
Msx3P70354 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Msx3P70354 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Msx3P70354 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Msx3P70354 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Msx3P70354 Mir6236-201ENSMUST00000184437 123 ntBASIC20.61■□□□□ 0.89
Msx3P70354 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms