Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rfx3P48381 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC18.12■□□□□ 0.49
Rfx3P48381 AC152827.1-201ENSMUST00000221143 2189 ntBASIC18.11■□□□□ 0.49
Rfx3P48381 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx3P48381 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.11■□□□□ 0.49
Rfx3P48381 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx3P48381 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx3P48381 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx3P48381 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx3P48381 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Rfx3P48381 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx3P48381 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx3P48381 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx3P48381 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx3P48381 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
Rfx3P48381 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Rfx3P48381 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx3P48381 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx3P48381 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx3P48381 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx3P48381 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx3P48381 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
Rfx3P48381 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Rfx3P48381 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx3P48381 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rfx3P48381 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.09■□□□□ 0.49
Rfx3P48381 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx3P48381 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx3P48381 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx3P48381 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx3P48381 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC18.09■□□□□ 0.49
Rfx3P48381 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx3P48381 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx3P48381 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Rfx3P48381 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Rfx3P48381 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.08■□□□□ 0.49
Rfx3P48381 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Rfx3P48381 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Rfx3P48381 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.48
Rfx3P48381 Gm18755-201ENSMUST00000218030 1099 ntBASIC18.08■□□□□ 0.48
Rfx3P48381 Gm5812-201ENSMUST00000061073 957 ntBASIC18.08■□□□□ 0.48
Rfx3P48381 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Rfx3P48381 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rfx3P48381 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rfx3P48381 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx3P48381 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx3P48381 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx3P48381 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx3P48381 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx3P48381 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
Rfx3P48381 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx3P48381 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Rfx3P48381 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC18.07■□□□□ 0.48
Rfx3P48381 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx3P48381 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx3P48381 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx3P48381 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx3P48381 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC18.06■□□□□ 0.48
Rfx3P48381 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx3P48381 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC18.06■□□□□ 0.48
Rfx3P48381 Gm5131-201ENSMUST00000212776 1238 ntBASIC18.06■□□□□ 0.48
Rfx3P48381 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx3P48381 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx3P48381 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx3P48381 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx3P48381 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx3P48381 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx3P48381 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx3P48381 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx3P48381 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Rfx3P48381 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx3P48381 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx3P48381 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx3P48381 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx3P48381 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC18.05■□□□□ 0.48
Rfx3P48381 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Rfx3P48381 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.05■□□□□ 0.48
Rfx3P48381 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx3P48381 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx3P48381 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx3P48381 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx3P48381 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Rfx3P48381 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx3P48381 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rfx3P48381 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC18.04■□□□□ 0.48
Rfx3P48381 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx3P48381 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx3P48381 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx3P48381 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx3P48381 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Rfx3P48381 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx3P48381 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx3P48381 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx3P48381 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.03■□□□□ 0.48
Rfx3P48381 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Rfx3P48381 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx3P48381 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC18.03■□□□□ 0.48
Rfx3P48381 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rfx3P48381 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rfx3P48381 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms