Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC19.04■□□□□ 0.64
Msx1P13297 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Msx1P13297 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Msx1P13297 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC19.03■□□□□ 0.64
Msx1P13297 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Msx1P13297 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.03■□□□□ 0.64
Msx1P13297 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Msx1P13297 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Msx1P13297 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Msx1P13297 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Msx1P13297 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Msx1P13297 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Msx1P13297 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Msx1P13297 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.64
Msx1P13297 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Msx1P13297 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Msx1P13297 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC19.02■□□□□ 0.64
Msx1P13297 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC19.02■□□□□ 0.64
Msx1P13297 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Msx1P13297 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.02■□□□□ 0.64
Msx1P13297 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Msx1P13297 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msx1P13297 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msx1P13297 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Msx1P13297 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msx1P13297 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Msx1P13297 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Msx1P13297 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Msx1P13297 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.01■□□□□ 0.63
Msx1P13297 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
Msx1P13297 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msx1P13297 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msx1P13297 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19■□□□□ 0.63
Msx1P13297 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC19■□□□□ 0.63
Msx1P13297 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC19■□□□□ 0.63
Msx1P13297 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msx1P13297 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19■□□□□ 0.63
Msx1P13297 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC19■□□□□ 0.63
Msx1P13297 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msx1P13297 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC19■□□□□ 0.63
Msx1P13297 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Msx1P13297 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19■□□□□ 0.63
Msx1P13297 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msx1P13297 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC18.99■□□□□ 0.63
Msx1P13297 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC18.99■□□□□ 0.63
Msx1P13297 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Msx1P13297 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Msx1P13297 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msx1P13297 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Msx1P13297 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msx1P13297 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Msx1P13297 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx1P13297 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC18.98■□□□□ 0.63
Msx1P13297 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx1P13297 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx1P13297 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Msx1P13297 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx1P13297 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx1P13297 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Msx1P13297 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
Msx1P13297 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx1P13297 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx1P13297 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Msx1P13297 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx1P13297 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx1P13297 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx1P13297 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx1P13297 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
Msx1P13297 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx1P13297 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC18.97■□□□□ 0.63
Msx1P13297 Wdr70-203ENSMUST00000227371 1130 ntBASIC18.97■□□□□ 0.63
Msx1P13297 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Msx1P13297 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Msx1P13297 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx1P13297 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx1P13297 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx1P13297 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Msx1P13297 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx1P13297 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx1P13297 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx1P13297 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Msx1P13297 Krt8-ps-201ENSMUST00000208495 945 ntBASIC18.96■□□□□ 0.63
Msx1P13297 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC18.96■□□□□ 0.63
Msx1P13297 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx1P13297 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
Msx1P13297 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx1P13297 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Msx1P13297 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Msx1P13297 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Msx1P13297 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.62
Msx1P13297 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Msx1P13297 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Msx1P13297 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Msx1P13297 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Msx1P13297 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.95■□□□□ 0.62
Msx1P13297 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Msx1P13297 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.95■□□□□ 0.62
Msx1P13297 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Msx1P13297 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Msx1P13297 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 80.5 ms