Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lire1P11260 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lire1P11260 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.79■□□□□ 0.6
Lire1P11260 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lire1P11260 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lire1P11260 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lire1P11260 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lire1P11260 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC18.78■□□□□ 0.6
Lire1P11260 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lire1P11260 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lire1P11260 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Lire1P11260 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lire1P11260 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lire1P11260 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lire1P11260 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lire1P11260 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Lire1P11260 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lire1P11260 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lire1P11260 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lire1P11260 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lire1P11260 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lire1P11260 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lire1P11260 Gm11847-201ENSMUST00000125165 1119 ntBASIC18.77■□□□□ 0.6
Lire1P11260 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Lire1P11260 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
Lire1P11260 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Lire1P11260 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lire1P11260 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Lire1P11260 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Lire1P11260 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Lire1P11260 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lire1P11260 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lire1P11260 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.76■□□□□ 0.59
Lire1P11260 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
Lire1P11260 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lire1P11260 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Lire1P11260 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lire1P11260 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Lire1P11260 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lire1P11260 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC18.76■□□□□ 0.59
Lire1P11260 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lire1P11260 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lire1P11260 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lire1P11260 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Lire1P11260 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lire1P11260 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Lire1P11260 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.75■□□□□ 0.59
Lire1P11260 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.75■□□□□ 0.59
Lire1P11260 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.75■□□□□ 0.59
Lire1P11260 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lire1P11260 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Lire1P11260 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC18.75■□□□□ 0.59
Lire1P11260 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lire1P11260 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lire1P11260 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC18.74■□□□□ 0.59
Lire1P11260 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lire1P11260 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lire1P11260 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lire1P11260 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC18.74■□□□□ 0.59
Lire1P11260 Gm21956-201ENSMUST00000179946 522 ntBASIC18.74■□□□□ 0.59
Lire1P11260 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lire1P11260 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lire1P11260 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Lire1P11260 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Lire1P11260 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC18.74■□□□□ 0.59
Lire1P11260 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.74■□□□□ 0.59
Lire1P11260 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lire1P11260 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Lire1P11260 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lire1P11260 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Lire1P11260 Nsd1-206ENSMUST00000224918 1001 ntBASIC18.73■□□□□ 0.59
Lire1P11260 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lire1P11260 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lire1P11260 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lire1P11260 Gm12821-201ENSMUST00000120022 600 ntBASIC18.72■□□□□ 0.59
Lire1P11260 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.72■□□□□ 0.59
Lire1P11260 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lire1P11260 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.72■□□□□ 0.59
Lire1P11260 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Lire1P11260 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Lire1P11260 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC18.71■□□□□ 0.59
Lire1P11260 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
Lire1P11260 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC18.71■□□□□ 0.59
Lire1P11260 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.71■□□□□ 0.59
Lire1P11260 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC18.71■□□□□ 0.59
Lire1P11260 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lire1P11260 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms