Protein–RNA interactions for Protein: O88705

Hcn3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, mousemouse

Predictions only

Length 779 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hcn3O88705 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hcn3O88705 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hcn3O88705 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hcn3O88705 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
Hcn3O88705 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Hcn3O88705 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hcn3O88705 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.23■□□□□ 0.67
Hcn3O88705 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hcn3O88705 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hcn3O88705 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hcn3O88705 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hcn3O88705 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.22■□□□□ 0.67
Hcn3O88705 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hcn3O88705 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hcn3O88705 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hcn3O88705 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Hcn3O88705 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hcn3O88705 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hcn3O88705 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hcn3O88705 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.22■□□□□ 0.67
Hcn3O88705 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hcn3O88705 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.22■□□□□ 0.67
Hcn3O88705 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hcn3O88705 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Hcn3O88705 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hcn3O88705 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Hcn3O88705 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Hcn3O88705 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Hcn3O88705 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Hcn3O88705 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hcn3O88705 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hcn3O88705 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hcn3O88705 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hcn3O88705 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hcn3O88705 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hcn3O88705 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Hcn3O88705 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hcn3O88705 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hcn3O88705 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hcn3O88705 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hcn3O88705 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Hcn3O88705 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.19■□□□□ 0.66
Hcn3O88705 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hcn3O88705 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Hcn3O88705 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC19.19■□□□□ 0.66
Hcn3O88705 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hcn3O88705 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hcn3O88705 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hcn3O88705 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hcn3O88705 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hcn3O88705 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hcn3O88705 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.18■□□□□ 0.66
Hcn3O88705 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Hcn3O88705 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Hcn3O88705 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Hcn3O88705 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hcn3O88705 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hcn3O88705 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hcn3O88705 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hcn3O88705 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC19.17■□□□□ 0.66
Hcn3O88705 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hcn3O88705 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hcn3O88705 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Hcn3O88705 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC19.17■□□□□ 0.66
Hcn3O88705 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC19.17■□□□□ 0.66
Hcn3O88705 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC19.17■□□□□ 0.66
Hcn3O88705 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Hcn3O88705 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hcn3O88705 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hcn3O88705 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hcn3O88705 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hcn3O88705 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Hcn3O88705 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hcn3O88705 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Hcn3O88705 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Hcn3O88705 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hcn3O88705 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Hcn3O88705 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Hcn3O88705 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hcn3O88705 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Hcn3O88705 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hcn3O88705 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hcn3O88705 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hcn3O88705 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hcn3O88705 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Hcn3O88705 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hcn3O88705 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hcn3O88705 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Hcn3O88705 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
Hcn3O88705 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Hcn3O88705 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC19.14■□□□□ 0.65
Hcn3O88705 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Hcn3O88705 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hcn3O88705 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hcn3O88705 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hcn3O88705 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hcn3O88705 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hcn3O88705 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hcn3O88705 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hcn3O88705 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms