Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Clk3O35492 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Clk3O35492 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Clk3O35492 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clk3O35492 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clk3O35492 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.04■□□□□ 0.64
Clk3O35492 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.04■□□□□ 0.64
Clk3O35492 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clk3O35492 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clk3O35492 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Clk3O35492 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clk3O35492 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Clk3O35492 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clk3O35492 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clk3O35492 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Clk3O35492 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clk3O35492 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clk3O35492 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clk3O35492 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clk3O35492 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC19.03■□□□□ 0.64
Clk3O35492 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Clk3O35492 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clk3O35492 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Clk3O35492 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Clk3O35492 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clk3O35492 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clk3O35492 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clk3O35492 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Clk3O35492 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Clk3O35492 Etf1-202ENSMUST00000180351 108 ntBASIC19.02■□□□□ 0.64
Clk3O35492 AC093043.1-201ENSMUST00000226700 898 ntBASIC19.02■□□□□ 0.64
Clk3O35492 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Clk3O35492 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Clk3O35492 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Clk3O35492 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Clk3O35492 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Clk3O35492 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Clk3O35492 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Clk3O35492 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Clk3O35492 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.01■□□□□ 0.63
Clk3O35492 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.01■□□□□ 0.63
Clk3O35492 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC19.01■□□□□ 0.63
Clk3O35492 Gm7417-201ENSMUST00000192950 473 ntBASIC19.01■□□□□ 0.63
Clk3O35492 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Clk3O35492 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Clk3O35492 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Clk3O35492 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Clk3O35492 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Clk3O35492 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Clk3O35492 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC19■□□□□ 0.63
Clk3O35492 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Clk3O35492 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC19■□□□□ 0.63
Clk3O35492 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC19■□□□□ 0.63
Clk3O35492 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC19■□□□□ 0.63
Clk3O35492 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC19■□□□□ 0.63
Clk3O35492 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Clk3O35492 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Clk3O35492 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Clk3O35492 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Clk3O35492 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Clk3O35492 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Clk3O35492 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Clk3O35492 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Clk3O35492 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Clk3O35492 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Clk3O35492 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.99■□□□□ 0.63
Clk3O35492 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Clk3O35492 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Clk3O35492 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC18.99■□□□□ 0.63
Clk3O35492 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Clk3O35492 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Clk3O35492 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Clk3O35492 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Clk3O35492 Rps24-207ENSMUST00000224568 714 ntBASIC18.98■□□□□ 0.63
Clk3O35492 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Clk3O35492 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Clk3O35492 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Clk3O35492 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Clk3O35492 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Clk3O35492 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Clk3O35492 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Clk3O35492 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Clk3O35492 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Clk3O35492 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Clk3O35492 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Clk3O35492 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Clk3O35492 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Clk3O35492 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Clk3O35492 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Clk3O35492 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Clk3O35492 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Clk3O35492 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Clk3O35492 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Clk3O35492 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clk3O35492 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Clk3O35492 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clk3O35492 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clk3O35492 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Clk3O35492 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC18.96■□□□□ 0.63
Clk3O35492 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms