Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 3000002C10Rik-201ENSMUST00000125451 1614 ntTSL 2 BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Mndal-202ENSMUST00000186442 1646 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Clp1Q99LI9 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Gm11919-201ENSMUST00000117609 721 ntBASIC11.65□□□□□ -0.54
Clp1Q99LI9 Myl1-203ENSMUST00000120415 621 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Olfr527-201ENSMUST00000172230 978 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Gm28356-201ENSMUST00000186941 927 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Gm42689-201ENSMUST00000202403 404 ntBASIC11.65□□□□□ -0.54
Clp1Q99LI9 Fcer2a-205ENSMUST00000208145 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Gm45745-201ENSMUST00000211447 1180 ntBASIC11.65□□□□□ -0.54
Clp1Q99LI9 Rps2-ps12-201ENSMUST00000214262 785 ntBASIC11.65□□□□□ -0.54
Clp1Q99LI9 Gpx4-ps2-201ENSMUST00000214811 555 ntBASIC11.65□□□□□ -0.54
Clp1Q99LI9 AC134537.1-201ENSMUST00000219205 265 ntBASIC11.65□□□□□ -0.54
Clp1Q99LI9 AC154436.1-201ENSMUST00000227272 782 ntBASIC11.65□□□□□ -0.54
Clp1Q99LI9 Fabp1-201ENSMUST00000067492 553 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC11.65□□□□□ -0.54
Clp1Q99LI9 AC154639.1-201ENSMUST00000224393 2849 ntBASIC11.65□□□□□ -0.54
Clp1Q99LI9 Gm17141-201ENSMUST00000167578 3148 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Gm43127-201ENSMUST00000195890 2789 ntBASIC11.65□□□□□ -0.54
Clp1Q99LI9 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Kcnma1-207ENSMUST00000172099 3354 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Clp1Q99LI9 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Clp1Q99LI9 AC153524.2-201ENSMUST00000218351 1375 ntTSL 5 BASIC11.65□□□□□ -0.55
Clp1Q99LI9 Slc10a1-201ENSMUST00000095572 1674 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Clp1Q99LI9 Gm5766-201ENSMUST00000160520 1977 ntBASIC11.65□□□□□ -0.55
Clp1Q99LI9 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
Clp1Q99LI9 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Clp1Q99LI9 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Clp1Q99LI9 Bora-201ENSMUST00000022656 2726 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Clp1Q99LI9 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Clp1Q99LI9 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Clp1Q99LI9 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Snx29-201ENSMUST00000096273 1622 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm45532-201ENSMUST00000210342 3620 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 Pigb-202ENSMUST00000098566 2193 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Cinp-201ENSMUST00000043716 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm42913-201ENSMUST00000197936 1853 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Atp5s-204ENSMUST00000220916 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC11.64□□□□□ -0.55
Clp1Q99LI9 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Dmrtc1b-201ENSMUST00000101324 1200 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Prl8a2-202ENSMUST00000110363 922 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Nup188-202ENSMUST00000113634 534 ntTSL 2 BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm13740-201ENSMUST00000120590 310 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 Aamdc-209ENSMUST00000144858 380 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm12676-201ENSMUST00000149078 808 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm4705-201ENSMUST00000177415 354 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 Dnajc4-202ENSMUST00000179118 840 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Prl8a2-201ENSMUST00000018403 939 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm27444-201ENSMUST00000184157 137 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm27833-201ENSMUST00000184285 124 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 Tmem242-202ENSMUST00000185896 780 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm29543-201ENSMUST00000188138 967 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 1700019D03Rik-207ENSMUST00000191441 638 ntAPPRIS P1 TSL 3 BASIC11.64□□□□□ -0.55
Clp1Q99LI9 9430092D12Rik-201ENSMUST00000194937 1274 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm3527-201ENSMUST00000198905 460 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 Zfp655-204ENSMUST00000199003 601 ntTSL 2 BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Ghrl-203ENSMUST00000203588 237 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Saa-ps-201ENSMUST00000211148 320 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm18042-201ENSMUST00000219887 790 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 AC133517.1-201ENSMUST00000225825 594 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 CT025679.1-201ENSMUST00000227106 449 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 Fam3b-201ENSMUST00000049721 853 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm10254-201ENSMUST00000052888 867 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Ifnl3-201ENSMUST00000078364 582 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm10228-201ENSMUST00000089105 532 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm31938-201ENSMUST00000218081 1818 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Hmgn3-203ENSMUST00000185315 1391 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Cep70-207ENSMUST00000190715 1768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC11.64□□□□□ -0.55
Clp1Q99LI9 Gm37058-201ENSMUST00000193393 1644 ntBASIC11.64□□□□□ -0.55
Clp1Q99LI9 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms