Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gng2-203ENSMUST00000159073 960 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Trim28Q62318 Krtcap2-204ENSMUST00000168900 582 ntTSL 3 BASIC14.16□□□□□ -0.14
Trim28Q62318 9530085P06Rik-201ENSMUST00000182121 827 ntBASIC14.16□□□□□ -0.14
Trim28Q62318 Ighv1-2-201ENSMUST00000195325 378 ntBASIC14.16□□□□□ -0.14
Trim28Q62318 Gm6794-201ENSMUST00000203829 457 ntBASIC14.16□□□□□ -0.14
Trim28Q62318 AC158388.3-202ENSMUST00000225517 775 ntBASIC14.16□□□□□ -0.14
Trim28Q62318 4933407L21Rik-201ENSMUST00000027426 1146 ntAPPRIS P5 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Ptma-201ENSMUST00000045897 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 2010001K21Rik-201ENSMUST00000060680 519 ntBASIC14.16□□□□□ -0.14
Trim28Q62318 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Gemin8-203ENSMUST00000096252 1039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Srd5a3-203ENSMUST00000113507 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Trim28Q62318 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Trim28Q62318 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
Trim28Q62318 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim28Q62318 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim28Q62318 AC125374.1-201ENSMUST00000213573 1400 ntBASIC14.15□□□□□ -0.14
Trim28Q62318 Xlr4c-201ENSMUST00000068551 1500 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim28Q62318 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim28Q62318 Hyal2-206ENSMUST00000195681 2968 ntBASIC14.15□□□□□ -0.14
Trim28Q62318 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC14.15□□□□□ -0.14
Trim28Q62318 Nmrk2-201ENSMUST00000005069 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Trim28Q62318 Gm13169-201ENSMUST00000122090 1459 ntBASIC14.15□□□□□ -0.14
Trim28Q62318 Gm29101-201ENSMUST00000188329 1471 ntBASIC14.15□□□□□ -0.14
Trim28Q62318 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Sh3gl2-202ENSMUST00000107184 671 ntTSL 2 BASIC14.15□□□□□ -0.14
Trim28Q62318 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Gm13094-201ENSMUST00000117930 409 ntBASIC14.15□□□□□ -0.14
Trim28Q62318 Gm13688-201ENSMUST00000121557 608 ntBASIC14.15□□□□□ -0.14
Trim28Q62318 2210408F21Rik-209ENSMUST00000146778 579 ntTSL 5 BASIC14.15□□□□□ -0.14
Trim28Q62318 Gm5274-201ENSMUST00000182641 1003 ntBASIC14.15□□□□□ -0.14
Trim28Q62318 Arl14-201ENSMUST00000183126 1200 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Trim28Q62318 Gm29543-201ENSMUST00000188138 967 ntBASIC14.15□□□□□ -0.14
Trim28Q62318 Gm3527-201ENSMUST00000198905 460 ntBASIC14.15□□□□□ -0.14
Trim28Q62318 Gm42803-201ENSMUST00000201051 451 ntBASIC14.15□□□□□ -0.14
Trim28Q62318 Fabp6-201ENSMUST00000020672 479 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Tmem238l-203ENSMUST00000211300 930 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Trim28Q62318 AC134860.2-201ENSMUST00000225277 1036 ntBASIC14.15□□□□□ -0.14
Trim28Q62318 4930553M12Rik-201ENSMUST00000057837 498 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Trim28Q62318 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
Trim28Q62318 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim28Q62318 Elovl7-201ENSMUST00000022207 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Gm38271-201ENSMUST00000192296 1603 ntBASIC14.15□□□□□ -0.14
Trim28Q62318 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Trim28Q62318 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim28Q62318 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.15
Trim28Q62318 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.15
Trim28Q62318 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
Trim28Q62318 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Kcnk5-201ENSMUST00000024011 3392 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Galm-201ENSMUST00000039205 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trim28Q62318 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
Trim28Q62318 Dhdds-209ENSMUST00000144668 3219 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Fastkd5-201ENSMUST00000110262 3015 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Trim28Q62318 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Bcl2l11-204ENSMUST00000103211 672 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Trim28Q62318 Gm23769-201ENSMUST00000104441 121 ntBASIC14.14□□□□□ -0.15
Trim28Q62318 Nifk-202ENSMUST00000112688 849 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim28Q62318 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC14.14□□□□□ -0.15
Trim28Q62318 Tnni1-204ENSMUST00000139986 651 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim28Q62318 Ttc39b-206ENSMUST00000148811 727 ntTSL 3 BASIC14.14□□□□□ -0.15
Trim28Q62318 Gm16240-201ENSMUST00000161924 614 ntTSL 2 BASIC14.14□□□□□ -0.15
Trim28Q62318 Gast-201ENSMUST00000017309 460 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Gm5808-201ENSMUST00000178090 357 ntBASIC14.14□□□□□ -0.15
Trim28Q62318 Gm24954-201ENSMUST00000178831 110 ntBASIC14.14□□□□□ -0.15
Trim28Q62318 Gm6291-201ENSMUST00000179994 309 ntBASIC14.14□□□□□ -0.15
Trim28Q62318 Gm7985-201ENSMUST00000183329 981 ntBASIC14.14□□□□□ -0.15
Trim28Q62318 Wbp1-209ENSMUST00000205023 716 ntBASIC14.14□□□□□ -0.15
Trim28Q62318 Chac2-201ENSMUST00000020553 1018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Gm7192-201ENSMUST00000210793 1137 ntBASIC14.14□□□□□ -0.15
Trim28Q62318 Gpx4-ps2-201ENSMUST00000214811 555 ntBASIC14.14□□□□□ -0.15
Trim28Q62318 Atp6v1e2-201ENSMUST00000065758 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Lig3-212ENSMUST00000173727 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC14.14□□□□□ -0.15
Trim28Q62318 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Poc1a-209ENSMUST00000216228 1431 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim28Q62318 Gm5532-201ENSMUST00000097531 1751 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim28Q62318 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms