Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Kcnip3-203ENSMUST00000103215 2732 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Kcnip3-201ENSMUST00000028850 2728 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Rims2-205ENSMUST00000227243 4760 ntAPPRIS ALT2 BASIC9.03□□□□□ -0.96
Hmgb3O54879 Sc5d-201ENSMUST00000052725 4787 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Hmgb3O54879 Slc35c1-201ENSMUST00000067631 3139 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.96
Hmgb3O54879 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
Hmgb3O54879 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.96
Hmgb3O54879 Acer2-202ENSMUST00000084433 4060 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
Hmgb3O54879 Optc-205ENSMUST00000153617 1615 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
Hmgb3O54879 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC9.02□□□□□ -0.96
Hmgb3O54879 Tmem131l-203ENSMUST00000192095 4774 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Pax3-201ENSMUST00000004994 3078 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Pold1-201ENSMUST00000049343 3454 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Myom1-203ENSMUST00000179759 5308 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
Hmgb3O54879 Vps8-206ENSMUST00000118923 4838 ntTSL 5 BASIC9.02□□□□□ -0.97
Hmgb3O54879 Ticam1-201ENSMUST00000058136 2992 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Padi1-201ENSMUST00000026378 3754 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Bora-201ENSMUST00000022656 2726 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 4930517G19Rik-201ENSMUST00000206152 1676 ntBASIC9.02□□□□□ -0.97
Hmgb3O54879 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC9.02□□□□□ -0.97
Hmgb3O54879 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Ppil2-202ENSMUST00000115719 838 ntTSL 2 BASIC9.02□□□□□ -0.97
Hmgb3O54879 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm8876-201ENSMUST00000120768 1122 ntBASIC9.02□□□□□ -0.97
Hmgb3O54879 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm7150-201ENSMUST00000122032 981 ntBASIC9.02□□□□□ -0.97
Hmgb3O54879 Mir1896-201ENSMUST00000122641 81 ntBASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC9.02□□□□□ -0.97
Hmgb3O54879 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm38228-201ENSMUST00000193169 1293 ntBASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm38002-201ENSMUST00000193255 180 ntBASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm45598-202ENSMUST00000210719 986 ntBASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm9797-202ENSMUST00000218003 294 ntBASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm6722-201ENSMUST00000221586 390 ntBASIC9.02□□□□□ -0.97
Hmgb3O54879 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm45837-201ENSMUST00000084894 4139 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
Hmgb3O54879 Abca8b-202ENSMUST00000106669 5052 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Arhgap24-203ENSMUST00000094559 3346 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Atxn2l-206ENSMUST00000206577 3894 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
Hmgb3O54879 Apobec3-205ENSMUST00000175752 1977 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Cstf1-201ENSMUST00000116375 3451 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Tcf4-203ENSMUST00000114977 3070 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Zfp870-201ENSMUST00000178401 5126 ntTSL 5 BASIC9.02□□□□□ -0.97
Hmgb3O54879 Tldc1-201ENSMUST00000049156 3085 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Prph2-201ENSMUST00000024773 2665 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Zfp324-201ENSMUST00000038701 4315 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Lrrc15-201ENSMUST00000064606 5310 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm45089-201ENSMUST00000208082 2040 ntBASIC9.02□□□□□ -0.97
Hmgb3O54879 Gm45675-201ENSMUST00000211202 3429 ntBASIC9.02□□□□□ -0.97
Hmgb3O54879 Mroh2a-201ENSMUST00000061013 7526 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
Hmgb3O54879 Tmco3-201ENSMUST00000045229 4335 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC9.01□□□□□ -0.97
Hmgb3O54879 Epas1-201ENSMUST00000024954 5309 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Atp10d-202ENSMUST00000126664 6052 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Cdc23-203ENSMUST00000133181 4133 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Dmtn-203ENSMUST00000110984 4176 ntAPPRIS P2 TSL 5 BASIC9.01□□□□□ -0.97
Hmgb3O54879 4930417O13Rik-203ENSMUST00000204911 3458 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Wwtr1-202ENSMUST00000120977 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Ppip5k1-203ENSMUST00000110626 5171 ntAPPRIS P2 TSL 5 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Arhgap6-204ENSMUST00000112129 2487 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC9.01□□□□□ -0.97
Hmgb3O54879 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Nap1l2-201ENSMUST00000121720 2465 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Gm28686-201ENSMUST00000187404 609 ntBASIC9.01□□□□□ -0.97
Hmgb3O54879 4930422M22Rik-201ENSMUST00000191492 948 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Gm44190-201ENSMUST00000205083 1401 ntBASIC9.01□□□□□ -0.97
Hmgb3O54879 Acsm5-205ENSMUST00000207440 2494 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Chml-204ENSMUST00000211207 1866 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Olfr707-205ENSMUST00000214112 1735 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC9.01□□□□□ -0.97
Hmgb3O54879 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Gm7046-201ENSMUST00000221351 977 ntBASIC9.01□□□□□ -0.97
Hmgb3O54879 AC133598.1-201ENSMUST00000224327 660 ntBASIC9.01□□□□□ -0.97
Hmgb3O54879 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hmgb3O54879 Tsga8-201ENSMUST00000049420 1070 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms