Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Ncdn-201ENSMUST00000030637 3681 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Gm29245-201ENSMUST00000187332 1416 ntBASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Thegl-203ENSMUST00000118941 746 ntTSL 3 BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Gsta3-202ENSMUST00000121676 894 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Olfr1432-201ENSMUST00000180978 930 ntAPPRIS ALT2 BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Gm7255-201ENSMUST00000187371 908 ntBASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Gm28096-201ENSMUST00000191391 824 ntTSL 5 BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Klk1b15-ps-201ENSMUST00000206273 715 ntBASIC13.16□□□□□ -0.3
Vps54Q5SPW0 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 AC167364.1-201ENSMUST00000221495 784 ntTSL 5 BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Dennd1c-201ENSMUST00000011623 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Gm17141-201ENSMUST00000167578 3148 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Gm6768-201ENSMUST00000022467 1878 ntBASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Abi2-207ENSMUST00000188618 4723 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 D2hgdh-201ENSMUST00000097633 3232 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 4930558J22Rik-201ENSMUST00000139822 1480 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 1810019N24Rik-201ENSMUST00000181128 1474 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps54Q5SPW0 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Ccin-201ENSMUST00000095107 1941 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Bpifb1-202ENSMUST00000081816 1699 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Palm2-201ENSMUST00000102904 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Ces2f-203ENSMUST00000212926 1430 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Kcnk5-201ENSMUST00000024011 3392 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Npy1r-201ENSMUST00000039303 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Gp2-201ENSMUST00000033255 1993 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Gm31718-201ENSMUST00000212406 1646 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Gm6158-201ENSMUST00000109467 904 ntBASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Smim11-202ENSMUST00000118064 782 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Gm43830-201ENSMUST00000198760 1067 ntBASIC13.15□□□□□ -0.3
Vps54Q5SPW0 4930447C11Rik-201ENSMUST00000204503 928 ntBASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Gm18035-201ENSMUST00000211962 589 ntBASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Crygd-201ENSMUST00000045028 613 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Flcn-203ENSMUST00000102697 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Pmp22-201ENSMUST00000018361 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 AW549877-201ENSMUST00000046633 5076 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Gm43375-201ENSMUST00000196705 2480 ntBASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps54Q5SPW0 AC113282.5-201ENSMUST00000224330 1679 ntAPPRIS P1 BASIC13.15□□□□□ -0.31
Vps54Q5SPW0 Agbl4-202ENSMUST00000097920 1798 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.31
Vps54Q5SPW0 Dcun1d2-204ENSMUST00000110840 2853 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Gm7405-201ENSMUST00000121476 1337 ntBASIC13.14□□□□□ -0.31
Vps54Q5SPW0 D430013B06Rik-201ENSMUST00000192922 1872 ntBASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Gdf2-201ENSMUST00000100720 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Arrb2-201ENSMUST00000079056 1443 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Lpo-201ENSMUST00000103177 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Stau2-202ENSMUST00000054668 2907 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Mtss1l-205ENSMUST00000144041 3225 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Elmo2-201ENSMUST00000071699 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Vps54Q5SPW0 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 113.4 ms