Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Gm13792-201ENSMUST00000121350 423 ntBASIC16.66■□□□□ 0.26
Cux1P53564 Gm20694-201ENSMUST00000176943 404 ntBASIC16.66■□□□□ 0.26
Cux1P53564 Pik3r4-206ENSMUST00000188784 1295 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Gm18182-201ENSMUST00000191380 1251 ntBASIC16.66■□□□□ 0.26
Cux1P53564 Ighv5-12-4-201ENSMUST00000195381 353 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Cux1P53564 Fibp-205ENSMUST00000225141 1209 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Cux1P53564 Gm10701-201ENSMUST00000098926 906 ntTSL 2 BASIC16.66■□□□□ 0.26
Cux1P53564 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Gm21136-201ENSMUST00000186812 2575 ntBASIC16.66■□□□□ 0.26
Cux1P53564 Gm6605-201ENSMUST00000031488 2574 ntBASIC16.66■□□□□ 0.26
Cux1P53564 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Bcl11a-203ENSMUST00000109516 2329 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Pfn4-202ENSMUST00000178879 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 9530026P05Rik-204ENSMUST00000204449 1740 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
Cux1P53564 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Cux1P53564 Gm5174-201ENSMUST00000171131 1423 ntBASIC16.66■□□□□ 0.26
Cux1P53564 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Dytn-201ENSMUST00000090313 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cux1P53564 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Zfp109-202ENSMUST00000206362 2932 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Gm6939-201ENSMUST00000122029 864 ntBASIC16.65■□□□□ 0.26
Cux1P53564 Gm13954-201ENSMUST00000123441 543 ntTSL 3 BASIC16.65■□□□□ 0.26
Cux1P53564 Pradc1-204ENSMUST00000126805 953 ntTSL 2 BASIC16.65■□□□□ 0.26
Cux1P53564 Ptpa-210ENSMUST00000136009 810 ntTSL 3 BASIC16.65■□□□□ 0.26
Cux1P53564 Muc2-202ENSMUST00000167366 711 ntTSL 5 BASIC16.65■□□□□ 0.26
Cux1P53564 4930509H03Rik-201ENSMUST00000196088 1215 ntBASIC16.65■□□□□ 0.26
Cux1P53564 Mylpf-206ENSMUST00000206772 653 ntTSL 3 BASIC16.65■□□□□ 0.26
Cux1P53564 Sult2b1-207ENSMUST00000210754 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Gm19090-201ENSMUST00000218187 774 ntBASIC16.65■□□□□ 0.26
Cux1P53564 AC124356.1-201ENSMUST00000221469 698 ntBASIC16.65■□□□□ 0.26
Cux1P53564 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Gm25125-201ENSMUST00000083340 136 ntBASIC16.65■□□□□ 0.26
Cux1P53564 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Ctss-201ENSMUST00000015667 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Fkbp6-201ENSMUST00000044972 1447 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Hnrnph2-203ENSMUST00000074950 2426 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Gpatch1-201ENSMUST00000079693 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Cux1P53564 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Tmem108-203ENSMUST00000189066 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Cux1P53564 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Guca2b-202ENSMUST00000106309 697 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
Cux1P53564 Olfr333-ps1-201ENSMUST00000122311 940 ntBASIC16.65■□□□□ 0.26
Cux1P53564 Rptoros-201ENSMUST00000127450 1174 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Gm17799-201ENSMUST00000183270 667 ntBASIC16.65■□□□□ 0.26
Cux1P53564 Gm19798-201ENSMUST00000201502 457 ntBASIC16.65■□□□□ 0.26
Cux1P53564 Gm44155-201ENSMUST00000203923 412 ntBASIC16.65■□□□□ 0.26
Cux1P53564 CT010486.3-201ENSMUST00000224555 811 ntBASIC16.65■□□□□ 0.26
Cux1P53564 AC149294.3-201ENSMUST00000226888 732 ntBASIC16.65■□□□□ 0.26
Cux1P53564 AC107711.3-201ENSMUST00000228939 1035 ntBASIC16.65■□□□□ 0.26
Cux1P53564 Tbata-202ENSMUST00000079235 696 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 9130227L01Rik-202ENSMUST00000189293 1906 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Cux1P53564 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cux1P53564 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.26
Cux1P53564 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Atp6v1c2-202ENSMUST00000095820 1549 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Gm42849-201ENSMUST00000202834 1584 ntTSL 5 BASIC16.64■□□□□ 0.25
Cux1P53564 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Cux1P53564 4930432L08Rik-201ENSMUST00000132154 1608 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cux1P53564 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
Cux1P53564 Gm7805-201ENSMUST00000154348 448 ntBASIC16.64■□□□□ 0.25
Cux1P53564 Gm16226-204ENSMUST00000162639 423 ntTSL 3 BASIC16.64■□□□□ 0.25
Cux1P53564 1700019D03Rik-205ENSMUST00000190726 702 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Cux1P53564 BB187690-201ENSMUST00000198619 1176 ntBASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms