Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 1700036A12Rik-202ENSMUST00000190053 1828 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Traf1P39428 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Traf1P39428 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Traf1P39428 Lrp2bp-201ENSMUST00000066451 1525 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Kif22-ps-201ENSMUST00000119302 1984 ntBASIC12.78□□□□□ -0.36
Traf1P39428 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Armt1-201ENSMUST00000095893 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC12.78□□□□□ -0.36
Traf1P39428 Gm13549-201ENSMUST00000118339 796 ntBASIC12.78□□□□□ -0.36
Traf1P39428 Gm14497-201ENSMUST00000119537 580 ntBASIC12.78□□□□□ -0.36
Traf1P39428 Gm3828-201ENSMUST00000121817 257 ntBASIC12.78□□□□□ -0.36
Traf1P39428 Gm17214-201ENSMUST00000164501 541 ntBASIC12.78□□□□□ -0.36
Traf1P39428 Gm7929-201ENSMUST00000178711 624 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Traf1P39428 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC12.78□□□□□ -0.36
Traf1P39428 Gm3015-202ENSMUST00000179803 624 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Traf1P39428 Gm26976-201ENSMUST00000182929 908 ntBASIC12.78□□□□□ -0.36
Traf1P39428 Gm44647-201ENSMUST00000207402 428 ntBASIC12.78□□□□□ -0.36
Traf1P39428 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Gm5178-201ENSMUST00000219380 898 ntBASIC12.78□□□□□ -0.36
Traf1P39428 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC12.78□□□□□ -0.36
Traf1P39428 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Naca-201ENSMUST00000073868 885 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Olfr538-201ENSMUST00000084457 933 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Traf1P39428 Slc10a1-202ENSMUST00000218162 1749 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Traf1P39428 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
Traf1P39428 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Traf1P39428 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Gm3755-201ENSMUST00000169555 1462 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Traf1P39428 Gapdhs-203ENSMUST00000182634 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Traf1P39428 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Traf1P39428 Gm6124-201ENSMUST00000188240 2580 ntBASIC12.77□□□□□ -0.36
Traf1P39428 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Traf1P39428 Csf1r-202ENSMUST00000115268 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Traf1P39428 Zfp869-201ENSMUST00000080987 1590 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Traf1P39428 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Traf1P39428 Gm6211-201ENSMUST00000147973 4275 ntBASIC12.77□□□□□ -0.36
Traf1P39428 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Traf1P39428 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Traf1P39428 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Traf1P39428 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Traf1P39428 Gm43127-201ENSMUST00000195890 2789 ntBASIC12.77□□□□□ -0.36
Traf1P39428 Sema4d-201ENSMUST00000021900 4482 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Traf1P39428 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Traf1P39428 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Traf1P39428 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Traf1P39428 Gm14005-209ENSMUST00000224993 1832 ntBASIC12.77□□□□□ -0.37
Traf1P39428 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC12.77□□□□□ -0.37
Traf1P39428 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 Syk-202ENSMUST00000118756 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC12.77□□□□□ -0.37
Traf1P39428 Apoc3-202ENSMUST00000118649 453 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Traf1P39428 Gm13709-201ENSMUST00000138573 614 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 Ins2-208ENSMUST00000162317 297 ntTSL 5 BASIC12.77□□□□□ -0.37
Traf1P39428 AU015836-205ENSMUST00000163458 911 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Traf1P39428 Gm25951-201ENSMUST00000175330 64 ntBASIC12.77□□□□□ -0.37
Traf1P39428 Gm28529-201ENSMUST00000186159 387 ntTSL 3 BASIC12.77□□□□□ -0.37
Traf1P39428 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC12.77□□□□□ -0.37
Traf1P39428 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC12.77□□□□□ -0.37
Traf1P39428 AC165249.1-202ENSMUST00000217990 734 ntTSL 3 BASIC12.77□□□□□ -0.37
Traf1P39428 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 C8g-202ENSMUST00000040042 1150 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 Gm8181-201ENSMUST00000062242 669 ntBASIC12.77□□□□□ -0.37
Traf1P39428 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 Gm5822-201ENSMUST00000161562 1378 ntBASIC12.77□□□□□ -0.37
Traf1P39428 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 Gm37580-201ENSMUST00000192408 2800 ntBASIC12.77□□□□□ -0.37
Traf1P39428 Smco1-201ENSMUST00000093183 1408 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Traf1P39428 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 Etfrf1-201ENSMUST00000039729 2436 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Traf1P39428 Erich3-203ENSMUST00000189969 3460 ntBASIC12.76□□□□□ -0.37
Traf1P39428 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC12.76□□□□□ -0.37
Traf1P39428 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC12.76□□□□□ -0.37
Traf1P39428 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Traf1P39428 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC12.76□□□□□ -0.37
Traf1P39428 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Traf1P39428 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC12.76□□□□□ -0.37
Traf1P39428 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Traf1P39428 Ap3b2-205ENSMUST00000152355 3168 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms