Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm17825-201ENSMUST00000206836 794 ntBASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 AC102569.1-201ENSMUST00000221563 685 ntBASIC10.27□□□□□ -0.77
Cdc40Q9DC48 AC164618.2-201ENSMUST00000224770 573 ntBASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Itga11-201ENSMUST00000034774 4969 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Phip-201ENSMUST00000034787 10756 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Fam198b-202ENSMUST00000118853 6729 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm6157-201ENSMUST00000199935 1897 ntBASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Zmym3-209ENSMUST00000121520 5564 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm43522-201ENSMUST00000196697 1922 ntBASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm35850-202ENSMUST00000211705 2120 ntBASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Dlec1-208ENSMUST00000165231 5263 ntAPPRIS P2 TSL 5 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Dlgap1-214ENSMUST00000155016 4712 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Tiam2-201ENSMUST00000072156 6127 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Cage1-201ENSMUST00000074969 2856 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Oplah-201ENSMUST00000023222 3970 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Ighv1-81-201ENSMUST00000103548 351 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Gm43695-201ENSMUST00000196545 196 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 CT573047.1-201ENSMUST00000223652 851 ntBASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Gm25517-201ENSMUST00000083865 134 ntBASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Myo5a-201ENSMUST00000123128 11702 ntTSL 5 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Imp4-201ENSMUST00000027303 5836 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Cacna1c-210ENSMUST00000187474 6911 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Slc29a3-201ENSMUST00000117513 5240 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Gm29358-202ENSMUST00000187941 3227 ntBASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Cdc40Q9DC48 Gm4900-201ENSMUST00000222046 1628 ntBASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Plin2-201ENSMUST00000000466 1888 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Zdbf2-201ENSMUST00000029025 12112 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Ifih1-201ENSMUST00000028259 5470 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Tacr1-201ENSMUST00000032122 5021 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Elf4-201ENSMUST00000033429 5847 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Dchs2-201ENSMUST00000191829 10783 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Vmn1r213-204ENSMUST00000228758 5975 ntAPPRIS P2 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Tns3-201ENSMUST00000020695 7483 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Gm36940-201ENSMUST00000194281 2036 ntBASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Gm14892-201ENSMUST00000117636 267 ntBASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Gm14740-201ENSMUST00000118538 1150 ntBASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Gm15374-201ENSMUST00000119313 844 ntBASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Gm16219-201ENSMUST00000120096 274 ntBASIC10.25□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms