Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 C530005A16Rik-201ENSMUST00000142815 2436 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Nhsl1-201ENSMUST00000037341 7321 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Fibcd1-201ENSMUST00000028188 4751 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Lsamp-201ENSMUST00000078873 2951 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Gm11949-201ENSMUST00000117640 372 ntBASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Gm38319-201ENSMUST00000194537 1266 ntBASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Gm30946-201ENSMUST00000198288 724 ntBASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Gm44323-201ENSMUST00000198689 129 ntBASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Gm42859-201ENSMUST00000199572 193 ntBASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Gm32111-201ENSMUST00000207689 846 ntBASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Mt1-202ENSMUST00000211807 1085 ntBASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Gm12216-207ENSMUST00000220191 1073 ntAPPRIS P5 TSL 5 BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 AC115122.1-201ENSMUST00000224850 1040 ntBASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Gm42851-201ENSMUST00000201325 1411 ntBASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Synpo2l-201ENSMUST00000057090 4394 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Dclk1-204ENSMUST00000196745 7962 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Gm6768-201ENSMUST00000022467 1878 ntBASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Tmod2-202ENSMUST00000098552 9871 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Immt-206ENSMUST00000166975 2469 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Dok4-204ENSMUST00000212810 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Cep250-204ENSMUST00000109619 7977 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Cep250-201ENSMUST00000039994 7979 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Zfp872-202ENSMUST00000178901 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Stk38-201ENSMUST00000009138 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 Loxhd1-202ENSMUST00000096547 6595 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cchcr1Q8K2I2 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Ptpn11-201ENSMUST00000054547 5535 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 C4b-201ENSMUST00000069507 5379 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 1700017B05Rik-201ENSMUST00000034846 4152 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Lig3-210ENSMUST00000173347 3631 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Ptp4a3-203ENSMUST00000165541 3539 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Hyal2-206ENSMUST00000195681 2968 ntBASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Corin-207ENSMUST00000177290 2943 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Nf2-202ENSMUST00000056290 2394 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Hemk1-201ENSMUST00000035196 2192 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 9130227L01Rik-202ENSMUST00000189293 1906 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Gm45140-202ENSMUST00000204419 5061 ntAPPRIS P5 TSL 5 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Gm46355-201ENSMUST00000221434 1671 ntTSL 5 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Tnpo3-201ENSMUST00000012679 4251 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Gm9133-201ENSMUST00000118289 540 ntBASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Gm12986-201ENSMUST00000119037 967 ntBASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Gm43916-201ENSMUST00000205062 967 ntBASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Gm44421-201ENSMUST00000205064 1221 ntBASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 CT485606.1-201ENSMUST00000213187 878 ntBASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Gm18042-201ENSMUST00000219887 790 ntBASIC13□□□□□ -0.33
Cchcr1Q8K2I2 AC154436.1-201ENSMUST00000227272 782 ntBASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Ipo4-201ENSMUST00000047131 3846 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Gm4763-201ENSMUST00000081657 882 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Gm13652-201ENSMUST00000143898 3412 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Myo15b-201ENSMUST00000040703 2825 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Dld-201ENSMUST00000110857 2544 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Zcchc4-201ENSMUST00000031077 5743 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Immt-205ENSMUST00000166938 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Cdkl2-201ENSMUST00000069937 3976 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Gm35021-201ENSMUST00000210105 2329 ntTSL 5 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Ugt1a10-201ENSMUST00000113142 2244 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Wdr19-204ENSMUST00000203653 6279 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Git1-202ENSMUST00000100812 3476 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
Cchcr1Q8K2I2 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 AC108416.1-201ENSMUST00000228755 1558 ntBASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 Gm19327-201ENSMUST00000220651 3271 ntBASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 Gsg1-203ENSMUST00000111910 1384 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 Rps6ka6-204ENSMUST00000113428 4135 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC12.99□□□□□ -0.33
Cchcr1Q8K2I2 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 59 ms