Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC15.06■□□□□ 0
Usp40Q8BWR4 Cd247-205ENSMUST00000161559 1816 ntTSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
Usp40Q8BWR4 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Zmat1-201ENSMUST00000064659 3501 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 4930412O13Rik-202ENSMUST00000114919 558 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
Usp40Q8BWR4 Gm13094-201ENSMUST00000117930 409 ntBASIC15.06■□□□□ 0
Usp40Q8BWR4 Gm13204-201ENSMUST00000120110 821 ntBASIC15.06■□□□□ 0
Usp40Q8BWR4 Gm15912-201ENSMUST00000128914 578 ntTSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Gm15287-201ENSMUST00000132564 751 ntTSL 2 BASIC15.06■□□□□ 0
Usp40Q8BWR4 Gm26368-201ENSMUST00000157826 118 ntBASIC15.06■□□□□ 0
Usp40Q8BWR4 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Gm24954-201ENSMUST00000178831 110 ntBASIC15.06■□□□□ 0
Usp40Q8BWR4 Gm26550-201ENSMUST00000180699 1184 ntTSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Gm7928-201ENSMUST00000181249 701 ntBASIC15.06■□□□□ 0
Usp40Q8BWR4 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC15.06■□□□□ 0
Usp40Q8BWR4 Gm37860-201ENSMUST00000195380 1034 ntBASIC15.06■□□□□ 0
Usp40Q8BWR4 Gm45670-201ENSMUST00000211382 711 ntTSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Nsmce2-203ENSMUST00000227173 1122 ntBASIC15.06■□□□□ 0
Usp40Q8BWR4 AC164099.1-201ENSMUST00000227780 333 ntBASIC15.06■□□□□ 0
Usp40Q8BWR4 Psmb7-201ENSMUST00000028083 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Rasl11a-201ENSMUST00000031646 1126 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Scgb2b2-201ENSMUST00000038835 520 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Ms4a7-202ENSMUST00000056035 882 ntTSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Usp40Q8BWR4 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Gm8684-201ENSMUST00000195078 1564 ntBASIC15.06■□□□□ 0
Usp40Q8BWR4 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Usp40Q8BWR4 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 AC124732.3-201ENSMUST00000221835 1765 ntBASIC15.06■□□□□ 0
Usp40Q8BWR4 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Usp40Q8BWR4 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC15.06■□□□□ 0
Usp40Q8BWR4 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Usp40Q8BWR4 AC122273.1-201ENSMUST00000213634 2327 ntBASIC15.05■□□□□ 0
Usp40Q8BWR4 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Usp40Q8BWR4 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC15.05■□□□□ 0
Usp40Q8BWR4 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Usp40Q8BWR4 Gm21939-201ENSMUST00000221137 2773 ntBASIC15.05■□□□□ 0
Usp40Q8BWR4 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Ighv1-50-201ENSMUST00000103521 390 ntAPPRIS P1 BASIC15.05■□□□□ -0
Usp40Q8BWR4 Pdzk1ip1-202ENSMUST00000106548 887 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Gm26313-201ENSMUST00000157770 308 ntBASIC15.05■□□□□ -0
Usp40Q8BWR4 Fcgr2b-203ENSMUST00000159688 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Gm26906-201ENSMUST00000180523 1228 ntTSL 5 BASIC15.05■□□□□ -0
Usp40Q8BWR4 Lockd-205ENSMUST00000185152 496 ntTSL 5 BASIC15.05■□□□□ -0
Usp40Q8BWR4 Tcstv1-202ENSMUST00000190512 875 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Gm42779-201ENSMUST00000198807 406 ntBASIC15.05■□□□□ -0
Usp40Q8BWR4 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 AC156790.2-201ENSMUST00000227115 568 ntBASIC15.05■□□□□ -0
Usp40Q8BWR4 Psca-201ENSMUST00000023265 860 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 4933407L21Rik-201ENSMUST00000027426 1146 ntAPPRIS P5 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Olfr1015-201ENSMUST00000047870 1016 ntAPPRIS P1 BASIC15.05■□□□□ -0
Usp40Q8BWR4 Mkrn1-ps1-201ENSMUST00000122035 1390 ntBASIC15.05■□□□□ -0
Usp40Q8BWR4 Trh-201ENSMUST00000006046 1384 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Gm11470-201ENSMUST00000118868 1475 ntBASIC15.05■□□□□ -0
Usp40Q8BWR4 Gm5159-201ENSMUST00000212733 1652 ntBASIC15.05■□□□□ -0
Usp40Q8BWR4 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Usp40Q8BWR4 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Poldip3-202ENSMUST00000100375 3157 ntTSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Usp40Q8BWR4 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Usp40Q8BWR4 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Usp40Q8BWR4 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Zfp652-201ENSMUST00000091565 2663 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Gm38312-201ENSMUST00000195426 1746 ntBASIC15.04■□□□□ -0
Usp40Q8BWR4 Wdr46-ps-201ENSMUST00000200591 1712 ntBASIC15.04■□□□□ -0
Usp40Q8BWR4 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Klf3-202ENSMUST00000166409 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Prr27-202ENSMUST00000101056 1337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Prr27-201ENSMUST00000002310 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Nifk-202ENSMUST00000112688 849 ntTSL 5 BASIC15.04■□□□□ -0
Usp40Q8BWR4 2610203C22Rik-201ENSMUST00000115480 1246 ntTSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Sgcg-202ENSMUST00000121148 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Usp40Q8BWR4 Stk33-205ENSMUST00000141210 949 ntTSL 3 BASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms