Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC14.22□□□□□ -0.13
Trim28Q62318 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Tmigd1-202ENSMUST00000102495 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 4930432L08Rik-201ENSMUST00000132154 1608 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim28Q62318 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC14.22□□□□□ -0.13
Trim28Q62318 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Trim28Q62318 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Prnd-201ENSMUST00000110169 1918 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Trim28Q62318 Gm26586-201ENSMUST00000181918 1745 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Prr27-202ENSMUST00000101056 1337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Prr27-201ENSMUST00000002310 1313 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Gm5159-201ENSMUST00000212733 1652 ntBASIC14.21□□□□□ -0.13
Trim28Q62318 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Trim28Q62318 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Unc119-202ENSMUST00000100755 933 ntTSL 2 BASIC14.21□□□□□ -0.13
Trim28Q62318 Pdzk1ip1-202ENSMUST00000106548 887 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Adig-202ENSMUST00000109484 488 ntTSL 2 BASIC14.21□□□□□ -0.13
Trim28Q62318 Rpl17-ps1-201ENSMUST00000119156 552 ntBASIC14.21□□□□□ -0.13
Trim28Q62318 Gm12688-201ENSMUST00000136525 701 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Gm26313-201ENSMUST00000157770 308 ntBASIC14.21□□□□□ -0.13
Trim28Q62318 Gm6606-201ENSMUST00000193613 947 ntBASIC14.21□□□□□ -0.13
Trim28Q62318 Gm18466-201ENSMUST00000209147 499 ntBASIC14.21□□□□□ -0.13
Trim28Q62318 AC154585.1-201ENSMUST00000218917 997 ntBASIC14.21□□□□□ -0.13
Trim28Q62318 Adig-201ENSMUST00000059889 632 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Rps3a2-201ENSMUST00000074245 792 ntBASIC14.21□□□□□ -0.13
Trim28Q62318 Krtap2-4-201ENSMUST00000074926 828 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Trim28Q62318 Prl7b1-201ENSMUST00000080595 925 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 2310016G11Rik-201ENSMUST00000094460 992 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Lrrc4-201ENSMUST00000062304 3615 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Trim28Q62318 Gm15651-201ENSMUST00000159953 2507 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Trim28Q62318 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Ano4-202ENSMUST00000181976 1410 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim28Q62318 Cpt1c-201ENSMUST00000063761 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim28Q62318 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Trim28Q62318 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim28Q62318 Gm12716-201ENSMUST00000120606 1354 ntBASIC14.21□□□□□ -0.14
Trim28Q62318 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Trim28Q62318 Gm43075-201ENSMUST00000198613 3905 ntBASIC14.21□□□□□ -0.14
Trim28Q62318 Gm45719-201ENSMUST00000207954 1662 ntBASIC14.2□□□□□ -0.14
Trim28Q62318 4931423N10Rik-201ENSMUST00000028113 1842 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 CT025678.1-201ENSMUST00000214795 2972 ntBASIC14.2□□□□□ -0.14
Trim28Q62318 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Ccdc32-203ENSMUST00000110834 828 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Mir432-201ENSMUST00000157230 75 ntBASIC14.2□□□□□ -0.14
Trim28Q62318 Mid1-ps1-201ENSMUST00000167967 1248 ntBASIC14.2□□□□□ -0.14
Trim28Q62318 Gm13272-201ENSMUST00000179425 811 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Trim28Q62318 Gm7572-201ENSMUST00000182616 766 ntBASIC14.2□□□□□ -0.14
Trim28Q62318 Mrgprb7-ps-201ENSMUST00000190238 964 ntBASIC14.2□□□□□ -0.14
Trim28Q62318 Gm37782-201ENSMUST00000194879 678 ntBASIC14.2□□□□□ -0.14
Trim28Q62318 A830092H15Rik-202ENSMUST00000195446 649 ntTSL 3 BASIC14.2□□□□□ -0.14
Trim28Q62318 Myo1h-207ENSMUST00000196676 1256 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Gm7902-201ENSMUST00000198842 947 ntBASIC14.2□□□□□ -0.14
Trim28Q62318 Ywhaq-ps1-201ENSMUST00000206623 710 ntBASIC14.2□□□□□ -0.14
Trim28Q62318 2310039L15Rik-203ENSMUST00000220058 727 ntTSL 5 BASIC14.2□□□□□ -0.14
Trim28Q62318 Olfr435-201ENSMUST00000058118 942 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Trim28Q62318 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC14.2□□□□□ -0.14
Trim28Q62318 Gm4763-201ENSMUST00000081657 882 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Klf3-202ENSMUST00000166409 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 4921524J17Rik-201ENSMUST00000047749 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Trim28Q62318 AC164099.2-201ENSMUST00000227795 2005 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Trim28Q62318 Nrf1-208ENSMUST00000115208 2492 ntTSL 5 BASIC14.2□□□□□ -0.14
Trim28Q62318 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Mkrn1-ps1-201ENSMUST00000122035 1390 ntBASIC14.2□□□□□ -0.14
Trim28Q62318 Mylk3-202ENSMUST00000121972 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim28Q62318 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trim28Q62318 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC14.19□□□□□ -0.14
Trim28Q62318 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Olfr1263-201ENSMUST00000111507 1029 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Trim28Q62318 Gm13827-201ENSMUST00000148801 372 ntBASIC14.19□□□□□ -0.14
Trim28Q62318 AC138716.2-201ENSMUST00000226670 1016 ntBASIC14.19□□□□□ -0.14
Trim28Q62318 Cypt12-201ENSMUST00000029080 550 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Trim28Q62318 Hcst-201ENSMUST00000075062 442 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Prss55-201ENSMUST00000089338 1032 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim28Q62318 Gm10580-201ENSMUST00000097985 396 ntBASIC14.19□□□□□ -0.14
Trim28Q62318 Gm10582-201ENSMUST00000097987 396 ntBASIC14.19□□□□□ -0.14
Trim28Q62318 Gm10583-201ENSMUST00000097988 396 ntBASIC14.19□□□□□ -0.14
Trim28Q62318 Gm37697-201ENSMUST00000195680 1844 ntBASIC14.19□□□□□ -0.14
Trim28Q62318 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 60.1 ms